Effective results for Legionella pneumophila str. Paris (eggnog40)
Summary
Number of putative secreted proteins: 386
- Predicted by T4SEpre: 482
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 63 proteins (8 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 297246.lpp1283 | + | (PF00314) | ER | ||
| 297246.lpp0469 | + | (PF00023) | ER | ||
| 297246.lpp0252 | + | ER | |||
| 297246.lpp2872 | (PF14566) | ER | |||
| 297246.lpp0782 | + | (ER) | |||
| 297246.lpp0787 | + | ER | |||
| 297246.lpp0430 | + | (ER) | |||
| 297246.lpp2465 | + | ER | |||
| 297246.lpp1263 | + | ER | |||
| 297246.lpp0327 | + | ER | |||
| 297246.lpp1312 | + | (mitochondrial) | |||
| 297246.lpp2681 | + | ER | |||
| 297246.lpp1880 | PF01150 | ER | |||
| 297246.lpp0134 | + | ER | |||
| 297246.lpp3071 | + | ER | |||
| 297246.lpp1085 | + | mitochondrial; (mitochondrial) | |||
| 297246.lpp2510 | + | ER | |||
| 297246.lpp2676 | + | ER | |||
| 297246.lpp1252 | + | ER | |||
| 297246.lpp0232 | + | (mitochondrial) | |||
| 297246.lpp0234 | + | (mitochondrial) | |||
| 297246.lpp1320 | + | (mitochondrial) | |||
| 297246.lpp1631 | + | (mitochondrial) | |||
| 297246.lpp1637 | + | mitochondrial | |||
| 297246.lpp1634 | + | mitochondrial; (mitochondrial) | |||
| 297246.lpp0379 | PF11901 | ER | |||
| 297246.lpp1962 | + | ER | |||
| 297246.lpp0812 | (PF00854) | (mitochondrial) | |||
| 297246.lpp0361 | + | (mitochondrial) | |||
| 297246.lpp0172 | + | ER | |||
| 297246.lpp0174 | + | ER | |||
| 297246.lpp0957 | + | ER | |||
| 297246.lpp0489 | + | ER | |||
| 297246.lpp1366 | + | mitochondrial | |||
| 297246.lpp1638 | + | ER | |||
| 297246.lpp2943 | + | ER | |||
| 297246.lpp1946 | + | ER | |||
| 297246.lpp1566 | (PF01610) | (ER) | |||
| 297246.lpp0763 | + | ER | |||
| 297246.lpp1706 | + | ER | |||
| 297246.lpp1017 | + | ER | |||
| 297246.lpp0963 | + | ER | |||
| 297246.lpp1955 | + | (mitochondrial) | |||
| 297246.lpp2157 | + | ER | |||
| 297246.lpp1926 | (PF02112) | ER | |||
| 297246.lpp0034 | + | ER | |||
| 297246.lpp0859 | + | (mitochondrial) | |||
| 297246.lpp2148 | (PF00854) | ER; (ER) | |||
| 297246.lpp1490 | (PF00854) | ER | |||
| 297246.lpp1033 | PF01150 | ER | |||
| 297246.lpp1156 | + | mitochondrial | |||
| 297246.lpp1935 | + | ER | |||
| 297246.lpp2174 | + | ER | |||
| 297246.lpp1557 | + | mitochondrial; (mitochondrial) | |||
| 297246.lpp1236 | + | (mitochondrial) | |||
| 297246.lpp2292 | + | (ER) | |||
| 297246.plpp0074 | + | ER | |||
| 297246.lpp0618 | (PF01610) | ER | |||
| 297246.lpp0473 | + | ER | |||
| 297246.lpp1825 | + | ER | |||
| 297246.lpp0316 | + | (mitochondrial) | |||
| 297246.lpp2740 | + | ER | |||
| 297246.lpp1108 | + | mitochondrial | |||
| 297246.lpp0319 | (PF01610) | ER | |||
| 297246.lpp0095 | + | mitochondrial | |||
| 297246.lpp1691 | + | ER | |||
| 297246.lpp2641 | + | ER | |||
| 297246.lpp1843 | + | (ER) | |||
| 297246.lpp2867 | + | (ER) | |||
| 297246.lpp1683 | + | (PF00023) | |||
| 297246.lpp1656 | + | (mitochondrial) | |||
| 297246.lpp1089 | (PF13427) (PF04229) | ||||
| 297246.lpp0350 | + | (PF00617) | |||
| 297246.lpp0233 | + | PF00646 | |||
| 297246.lpp2851 | (PF00854) | (ER) | |||
| 297246.lpp2698 | (PF01541) | (ER) | |||
| 297246.lpp2690 | + | (plastid) | |||
| 297246.lpp1615 | + | (plastid) | |||
| 297246.lpp0372 | + | (mitochondrial) | |||
| 297246.lpp0576 | (PF04229) | (ER) | |||
| 297246.lpp1961 | + | (PF04488) | |||
| 297246.lpp1437 | + | (mitochondrial) | |||
| 297246.lpp1766 | + | (ER) | |||
| 297246.lpp0362 | + | (mitochondrial) | |||
| 297246.plpp0068 | (PF13427) | (ER) | |||
| 297246.lpp2887 | + | (PF04564) | |||
| 297246.lpp2591 | + | (plastid) | |||
| 297246.lpp0835 | + | (ER) | |||
| 297246.lpp0468 | + | (mitochondrial) | |||
| 297246.lpp2410 | (PF01610) | (mitochondrial) | |||
| 297246.lpp1932 | + | PF01369 | |||
| 297246.lpp1939 | + | (mitochondrial) | |||
| 297246.lpp0988 | + | (ER) | |||
| 297246.lpp2933 | + | (mitochondrial) | |||
| 297246.lpp1823 | + | (mitochondrial) | |||
| 297246.lpp0269 | + | (mitochondrial) | |||
| 297246.lpp2938 | + | (mitochondrial) | |||
| 297246.lpp2061 | + | (PF00023) | |||
| 297246.lpp0071 | (PF01610) | (mitochondrial); not used | |||
| 297246.lpp1857 | + | (mitochondrial) | |||
| 297246.lpp0094 | + | (mitochondrial) | |||
| 297246.lpp2139 | + | ||||
| 297246.lpp0933 | + | ||||
| 297246.lpp1682 | + | ||||
| 297246.lpp1681 | + | ||||
| 297246.lpp1445 | + | ||||
| 297246.lpp1444 | + | ||||
| 297246.lpp1447 | + | ||||
| 297246.lpp1440 | + | ||||
| 297246.lpp2316 | + | ||||
| 297246.lpp2311 | (PF01610) | ||||
| 297246.lpp0799 | + | ||||
| 297246.lpp0429 | + | ||||
| 297246.lpp2656 | + | ||||
| 297246.lpp2491 | + | ||||
| 297246.lpp0331 | (PF01541) | ||||
| 297246.lpp0332 | + | ||||
| 297246.lpp0256 | + | ||||
| 297246.lpp0254 | + | ||||
| 297246.lpp0253 | + | ||||
| 297246.lpp0251 | + | ||||
| 297246.lpp1640 | + | ||||
| 297246.lpp1309 | + | ||||
| 297246.lpp1899 | + | ||||
| 297246.lpp2016 | + | ||||
| 297246.lpp1641 | (PF14701) | ||||
| 297246.lpp2308 | + | ||||
| 297246.lpp2300 | + | ||||
| 297246.lpp2773 | + | ||||
| 297246.lpp2276 | + | ||||
| 297246.lpp2270 | + | ||||
| 297246.lpp3004 | + | ||||
| 297246.lpp2775 | + | ||||
| 297246.lpp3009 | + | ||||
| 297246.lpp3008 | + | ||||
| 297246.lpp1090 | + | ||||
| 297246.lpp2479 | + | ||||
| 297246.lpp2461 | + | ||||
| 297246.lpp0224 | + | ||||
| 297246.lpp1882 | + | ||||
| 297246.lpp0130 | + | ||||
| 297246.lpp1154 | + | ||||
| 297246.lpp2819 | + | ||||
| 297246.lpp2062 | + | ||||
| 297246.lpp1799 | + | ||||
| 297246.lpp1790 | + | ||||
| 297246.plpp0114 | + | ||||
| 297246.lpp2202 | + | ||||
| 297246.lpp3072 | + | ||||
| 297246.lpp1642 | + | ||||
| 297246.lpp2516 | + | ||||
| 297246.lpp2517 | + | ||||
| 297246.lpp2511 | + | ||||
| 297246.lpp0688 | + | ||||
| 297246.lpp2476 | + | ||||
| 297246.lpp2472 | + | ||||
| 297246.lpp1251 | + | ||||
| 297246.lpp1253 | + | ||||
| 297246.lpp2850 | + | ||||
| 297246.lpp2852 | + | ||||
| 297246.lpp1667 | + | ||||
| 297246.lpp2076 | + | ||||
| 297246.lpp2210 | (PF16661) | ||||
| 297246.lpp1591 | + | ||||
| 297246.lpp1632 | + | ||||
| 297246.lpp2501 | + | ||||
| 297246.lpp1666 | + | ||||
| 297246.lpp0697 | + | ||||
| 297246.lpp0547 | + | ||||
| 297246.lpp0349 | + | ||||
| 297246.lpp1333 | (PF00854) | ||||
| 297246.lpp0110 | + | ||||
| 297246.lpp0117 | + | ||||
| 297246.lpp1409 | + | ||||
| 297246.lpp1404 | + | ||||
| 297246.lpp2192 | + | ||||
| 297246.lpp2194 | (PF12471) | ||||
| 297246.lpp2195 | (PF07958) | ||||
| 297246.lpp2198 | + | ||||
| 297246.lpp2225 | + | ||||
| 297246.plpp0006 | (PF00854) | ||||
| 297246.plpp0003 | + | ||||
| 297246.lpp1625 | + | ||||
| 297246.lpp2458 | + | ||||
| 297246.lpp2455 | + | ||||
| 297246.lpp2980 | + | ||||
| 297246.lpp0578 | + | ||||
| 297246.lpp1342 | + | ||||
| 297246.lpp1186 | + | ||||
| 297246.lpp0109 | (PF05761) | ||||
| 297246.lpp0108 | + | ||||
| 297246.lpp0104 | + | ||||
| 297246.lpp0100 | + | ||||
| 297246.lpp1291 | + | ||||
| 297246.lpp1967 | + | ||||
| 297246.lpp2051 | (PF01541) | ||||
| 297246.lpp2055 | (PF01541) | ||||
| 297246.lpp2059 | + | ||||
| 297246.lpp1432 | + | ||||
| 297246.lpp0811 | (PF01541) | ||||
| 297246.lpp1439 | + | ||||
| 297246.lpp1502 | + | ||||
| 297246.lpp2237 | + | ||||
| 297246.lpp3047 | + | ||||
| 297246.lpp0581 | + | ||||
| 297246.lpp2527 | + | ||||
| 297246.lpp2525 | (PF07700) | ||||
| 297246.lpp2521 | + | ||||
| 297246.lpp2428 | + | ||||
| 297246.lpp1761 | + | ||||
| 297246.lpp0360 | + | ||||
| 297246.lpp2738 | + | ||||
| 297246.plpp0069 | (PF04229) | ||||
| 297246.lpp0008 | + | ||||
| 297246.lpp0959 | + | ||||
| 297246.lpp0955 | (PF09265) | ||||
| 297246.lpp2088 | + | ||||
| 297246.lpp2082 | PF00646 | ||||
| 297246.lpp2086 | + | ||||
| 297246.lpp2087 | + | ||||
| 297246.lpp1609 | + | ||||
| 297246.lpp1603 | PF14360 | ||||
| 297246.lpp2555 | + | ||||
| 297246.lpp2432 | + | ||||
| 297246.lpp2888 | + | ||||
| 297246.lpp1738 | + | ||||
| 297246.lpp2889 | + | ||||
| 297246.lpp2896 | (PF01541) | ||||
| 297246.lpp1160 | + | ||||
| 297246.lpp1168 | + | ||||
| 297246.lpp2948 | + | ||||
| 297246.lpp2944 | + | ||||
| 297246.lpp2947 | + | ||||
| 297246.lpp1940 | + | ||||
| 297246.lpp1941 | + | ||||
| 297246.lpp1942 | + | ||||
| 297246.lpp1944 | (PF01541) | ||||
| 297246.lpp0012 | + | ||||
| 297246.lpp1380 | + | ||||
| 297246.lpp1381 | + | ||||
| 297246.lpp2882 | + | ||||
| 297246.lpp1561 | + | ||||
| 297246.lpp0310 | + | ||||
| 297246.lpp2095 | + | ||||
| 297246.lpp2094 | + | ||||
| 297246.lpp2093 | + | ||||
| 297246.lpp2099 | + | ||||
| 297246.lpp2444 | + | ||||
| 297246.lpp2546 | + | ||||
| 297246.lpp2402 | (PF01610) | ||||
| 297246.lpp2408 | + | ||||
| 297246.lpp1508 | + | ||||
| 297246.lpp1010 | + | ||||
| 297246.lpp1173 | + | ||||
| 297246.lpp0150 | + | ||||
| 297246.lpp2979 | + | ||||
| 297246.lpp2976 | + | ||||
| 297246.lpp1952 | + | ||||
| 297246.lpp1959 | + | ||||
| 297246.lpp0021 | + | ||||
| 297246.lpp2578 | + | ||||
| 297246.lpp2579 | + | ||||
| 297246.lpp2150 | + | ||||
| 297246.lpp2577 | + | ||||
| 297246.lpp0717 | (PF01541) | ||||
| 297246.plpp0042 | + | ||||
| 297246.lpp2572 | + | ||||
| 297246.lpp2573 | + | ||||
| 297246.lpp2417 | + | ||||
| 297246.lpp2419 | (PF09445) | ||||
| 297246.lpp1715 | + | ||||
| 297246.lpp1716 | + | ||||
| 297246.lpp0202 | + | ||||
| 297246.lpp2704 | + | ||||
| 297246.lpp1002 | + | ||||
| 297246.lpp1144 | (PF01541) | ||||
| 297246.lpp1146 | + | ||||
| 297246.lpp1149 | + | ||||
| 297246.lpp0442 | + | ||||
| 297246.lpp0140 | + | ||||
| 297246.lpp0145 | + | ||||
| 297246.lpp1658 | + | ||||
| 297246.lpp0039 | (PF01541) | ||||
| 297246.lpp0037 | + | ||||
| 297246.lpp0030 | + | ||||
| 297246.lpp1812 | (PF01541) | ||||
| 297246.lpp1818 | + | ||||
| 297246.lpp2149 | + | ||||
| 297246.lpp1546 | + | ||||
| 297246.lpp2443 | + | ||||
| 297246.lpp2360 | (PF16661) | ||||
| 297246.lpp2839 | + | ||||
| 297246.lpp2777 | + | ||||
| 297246.lpp1030 | + | ||||
| 297246.lpp1031 | + | ||||
| 297246.lpp1035 | (PF01610) | ||||
| 297246.lpp1007 | + | ||||
| 297246.lpp1006 | + | ||||
| 297246.lpp1150 | + | ||||
| 297246.lpp2607 | + | ||||
| 297246.lpp2604 | + | ||||
| 297246.lpp2605 | + | ||||
| 297246.lpp1931 | + | ||||
| 297246.lpp0047 | + | ||||
| 297246.lpp0286 | + | ||||
| 297246.lpp2175 | + | ||||
| 297246.lpp1556 | + | ||||
| 297246.lpp2286 | + | ||||
| 297246.lpp2594 | + | ||||
| 297246.lpp2592 | + | ||||
| 297246.lpp2593 | + | ||||
| 297246.lpp1486 | + | ||||
| 297246.lpp0607 | + | ||||
| 297246.lpp1025 | + | ||||
| 297246.lpp1029 | + | ||||
| 297246.lpp0748 | + | ||||
| 297246.lpp1121 | + | ||||
| 297246.lpp1125 | + | ||||
| 297246.lpp2615 | + | ||||
| 297246.lpp2544 | + | ||||
| 297246.lpp2903 | + | ||||
| 297246.lpp1147 | + | ||||
| 297246.lpp2909 | + | ||||
| 297246.lpp1833 | + | ||||
| 297246.lpp2167 | + | ||||
| 297246.lpp2166 | + | ||||
| 297246.lpp0982 | + | ||||
| 297246.lpp2587 | + | ||||
| 297246.lpp1584 | (PF04229) | ||||
| 297246.lpp0503 | + | ||||
| 297246.lpp0505 | + | ||||
| 297246.lpp1111 | + | ||||
| 297246.lpp1139 | + | ||||
| 297246.lpp1130 | + | ||||
| 297246.lpp0471 | + | ||||
| 297246.lpp0751 | + | ||||
| 297246.lpp0062 | + | ||||
| 297246.lpp2809 | + | ||||
| 297246.lpp2800 | + | ||||
| 297246.lpp2801 | + | ||||
| 297246.lpp1914 | + | ||||
| 297246.lpp0080 | + | ||||
| 297246.lpp0882 | (PF01541) | ||||
| 297246.lpp2248 | + | ||||
| 297246.lpp2249 | + | ||||
| 297246.lpp2246 | + | ||||
| 297246.lpp0750 | + | ||||
| 297246.lpp2746 | + | ||||
| 297246.lpp2745 | + | ||||
| 297246.lpp2748 | + | ||||
| 297246.lpp2066 | + | ||||
| 297246.lpp1105 | + | ||||
| 297246.lpp1100 | + | ||||
| 297246.lpp1101 | + | ||||
| 297246.lpp2637 | + | ||||
| 297246.lpp1109 | + | ||||
| 297246.lpp1852 | (PF01541) | ||||
| 297246.lpp1855 | + | ||||
| 297246.lpp2810 | + | ||||
| 297246.lpp1848 | + | ||||
| 297246.lpp2101 | (PF04488) | ||||
| 297246.lpp2104 | + | ||||
| 297246.lpp2037 | (PF01610) | ||||
| 297246.lpp2033 | + | ||||
| 297246.lpp0504 | + | ||||
| 297246.plpp0092 | (PF13427) | ||||
| 297246.lpp2325 | (PF07700) | ||||
| 297246.lpp2329 | + | ||||
| 297246.lpp2328 | + | ||||
| 297246.lpp0675 | + | ||||
| 297246.lpp2259 | + | ||||
| 297246.lpp3025 | (PF08123) | ||||
| 297246.lpp1076 | + | ||||
| 297246.lpp1676 | + | ||||
| 297246.lpp1112 | + | ||||
| 297246.lpp2644 | + | ||||
| 297246.lpp2486 | PF00646 | ||||
| 297246.lpp2487 | + | ||||
| 297246.lpp2480 | + | ||||
| 297246.lpp0304 | + | ||||
| 297246.lpp0245 | + | ||||
| 297246.lpp0246 | + | ||||
| 297246.lpp1845 | + | ||||
| 297246.lpp2865 | + | ||||
| 297246.lpp2622 | + | ||||
| 297246.lpp2626 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.8 (8/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.8 (8/10 KEGG proteins)
Release announcements
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Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
