Metamenu

Effective results for marine actinobacterium PHSC20C1 (eggnog40)

Summary

Number of putative secreted proteins: 19
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 19 proteins (2 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
312284.A20C1_12767(PF13396)ER
312284.A20C1_12772(PF13396)ER
312284.A20C1_09924(PF08392)(ER)
312284.A20C1_00350(PF00476)ER
312284.A20C1_03901(PF13396)ER
312284.A20C1_06801(PF13396)ER
312284.A20C1_05437(PF13396)ER
312284.A20C1_11326(PF13396)ER
312284.A20C1_09604(PF14311)(mitochondrial)
312284.A20C1_11361(PF13396)(ER)
312284.A20C1_03268(PF00476)(plastid)
312284.A20C1_02891(PF00476)
312284.A20C1_11236PF08213not used
312284.A20C1_03871(PF00476)
312284.A20C1_00180PF08923
312284.A20C1_08558(PF16952)
312284.A20C1_04336(PF03015)
312284.A20C1_01091(PF01687)
312284.A20C1_09099(PF01687)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================