Metamenu

Effective results for Oceanicaulis sp. HTCC2633 (eggnog40)

Summary

Number of putative secreted proteins: 81
- Predicted by T4SEpre: 71
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 23 proteins (2 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314254.OA2633_04976+(mitochondrial)
314254.OA2633_13900PF01731ER
314254.OA2633_05371+ER
314254.OA2633_00300+(ER); ER
314254.OA2633_09119+ER
314254.OA2633_00185+(mitochondrial)
314254.OA2633_11570+ER
314254.OA2633_07844+ER
314254.OA2633_01841+mitochondrial
314254.OA2633_07619(PF13469)(ER); ER
314254.OA2633_03816+(ER)
314254.OA2633_12780+ER
314254.OA2633_02531+ER
314254.OA2633_01139(PF07646)ER
314254.OA2633_05631(PF05684)ER
314254.OA2633_03391+ER
314254.OA2633_12800(PF00050)ER
314254.OA2633_03831+(mitochondrial)
314254.OA2633_12740+ER; (ER)
314254.OA2633_13765+ER
314254.OA2633_05952+ER; (ER)
314254.OA2633_10949+(mitochondrial)
314254.OA2633_14985+ER
314254.OA2633_04846+ER
314254.OA2633_02851(PF06455)ER
314254.OA2633_10519PF10712ER
314254.OA2633_05286+(mitochondrial)
314254.OA2633_03636+(mitochondrial)
314254.OA2633_05401+(mitochondrial)
314254.OA2633_08039+
314254.OA2633_13715+
314254.OA2633_12240+
314254.OA2633_14706+
314254.OA2633_09834+
314254.OA2633_07579(PF13469)
314254.OA2633_03466+
314254.OA2633_09539+
314254.OA2633_10234+
314254.OA2633_03881(PF05684)
314254.OA2633_12670+
314254.OA2633_13610(PF13875)
314254.OA2633_12855+
314254.OA2633_02596+
314254.OA2633_06214(PF10013)not used
314254.OA2633_08049(PF13429)
314254.OA2633_00215+
314254.OA2633_09129+
314254.OA2633_11400(PF13455)
314254.OA2633_06264+
314254.OA2633_07699+
314254.OA2633_05106+
314254.OA2633_14316(PF13469)
314254.OA2633_15225+
314254.OA2633_05616(PF14336)
314254.OA2633_03191+
314254.OA2633_13205(PF13429)
314254.OA2633_10179+
314254.OA2633_11228+
314254.OA2633_08439(PF13469)
314254.OA2633_12560(PF04768)
314254.OA2633_14536+
314254.OA2633_10549+
314254.OA2633_10099+
314254.OA2633_02576+
314254.OA2633_10339(PF13469)
314254.OA2633_11395+
314254.OA2633_13235+
314254.OA2633_10524+
314254.OA2633_06299(PF13469)
314254.OA2633_13405+
314254.OA2633_04316+
314254.OA2633_09349+
314254.OA2633_02251+
314254.OA2633_11009(PF13469)
314254.OA2633_04936+
314254.OA2633_00350+
314254.OA2633_03551+
314254.OA2633_00015(PF14216)
314254.OA2633_04136(PF13415)
314254.OA2633_13890+
314254.OA2633_11590+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.6 (6/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================