Effective results for Oceanicola granulosus HTCC2516 (eggnog40)

Summary

Number of putative secreted proteins: 65
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 65 proteins (2 high, 63 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
314256.OG2516_11126				(PF07517) (PF01043)	(mitochondrial)
314256.OG2516_11096				PF10712	(mitochondrial)
314256.OG2516_17855				(PF11977)	ER
314256.OG2516_11046				(PF13704)	(mitochondrial); mitochondrial
314256.OG2516_11641				(PF08570)	ER
314256.OG2516_01109				(PF08570)	ER
314256.OG2516_02803				(PF08402)	(mitochondrial)
314256.OG2516_18420				(PF07517) (PF01043)
314256.OG2516_11041				(PF02485)	(plastid)
314256.OG2516_18615				(PF08402)	(mitochondrial)
314256.OG2516_17835				(PF08402)	(mitochondrial)
314256.OG2516_14476				(PF07517) (PF01043)
314256.OG2516_08953				(PF09458)
314256.OG2516_16836				(PF02485)
314256.OG2516_00974				(PF13704)
314256.OG2516_19080				(PF11338)	not used
314256.OG2516_05283				(PF00614)
314256.OG2516_00414				(PF01321)
314256.OG2516_12839				(PF00614)
314256.OG2516_19075				(PF00829)
314256.OG2516_04099				(PF08402)
314256.OG2516_16259				(PF08402)
314256.OG2516_03128				(PF08402)
314256.OG2516_13696				(PF08402)
314256.OG2516_12101				(PF08402)
314256.OG2516_12614				(PF08402)
314256.OG2516_15954				(PF08402)
314256.OG2516_12774				(PF01321)
314256.OG2516_17720				(PF08402)
314256.OG2516_08122				(PF13704)
314256.OG2516_18265				(PF08402)
314256.OG2516_16469				(PF08402)
314256.OG2516_04049				(PF11338)
314256.OG2516_16269				(PF01321)
314256.OG2516_07937				(PF01321)
314256.OG2516_07243				(PF08402)
314256.OG2516_07116				(PF08402)
314256.OG2516_10446				(PF08402)
314256.OG2516_06956				(PF08402)
314256.OG2516_02439				(PF08402)
314256.OG2516_06556				(PF08402)
314256.OG2516_05143				(PF01321)
314256.OG2516_18005				(PF08402)
314256.OG2516_04004				(PF00829)
314256.OG2516_18915				PF00435
314256.OG2516_04164				(PF08402)
314256.OG2516_10551				(PF08402)
314256.OG2516_02574				(PF01321)
314256.OG2516_12664				(PF08402)
314256.OG2516_18750				(PF08402)
314256.OG2516_14850				(PF16952)
314256.OG2516_18685				(PF08402)
314256.OG2516_15419				(PF08402)
314256.OG2516_05553				(PF16332)
314256.OG2516_00984				(PF13704)
314256.OG2516_00989				(PF13704)
314256.OG2516_16199				(PF08402)
314256.OG2516_06591				(PF08402)
314256.OG2516_13059				(PF08402)
314256.OG2516_18305				(PF08402)
314256.OG2516_08157				(PF13704)
314256.OG2516_11561				(PF01321)
314256.OG2516_00954				(PF08402)
314256.OG2516_17655				(PF01321)
314256.OG2516_05573				(PF08402)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================