Effective results for Parvularcula bermudensis HTCC2503 (eggnog40)

Summary

Number of putative secreted proteins: 66
- Predicted by T4SEpre: 63
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 12 proteins (4 high, 8 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314260.PB2503_10724+ER
314260.PB2503_05197+ER
314260.PB2503_01767+ER
314260.PB2503_02987+ER
314260.PB2503_02982+ER
314260.PB2503_08969+ER; (ER)
314260.PB2503_06982+(mitochondrial)
314260.PB2503_02887+ER
314260.PB2503_08599+(ER)
314260.PB2503_08609+ER
314260.PB2503_10569+ER
314260.PB2503_06702PF01731ER
314260.PB2503_04167+ER
314260.PB2503_11099+ER
314260.PB2503_09624+ER
314260.PB2503_06022(PF11074)(mitochondrial)
314260.PB2503_09829+mitochondrial; (mitochondrial)
314260.PB2503_10339+ER
314260.PB2503_10914+(mitochondrial)
314260.PB2503_09589+ER
314260.PB2503_04837+ER
314260.PB2503_12749+ER
314260.PB2503_04817+mitochondrial; (mitochondrial)
314260.PB2503_05007+ER
314260.PB2503_09734+(ER)
314260.PB2503_13489+(ER)
314260.PB2503_05862+(mitochondrial)
314260.PB2503_01357+
314260.PB2503_01517(PF05019)
314260.PB2503_01532(PF05019)
314260.PB2503_10289+
314260.PB2503_06632+
314260.PB2503_06362+
314260.PB2503_06367+
314260.PB2503_01527(PF05019)
314260.PB2503_03497PF01096
314260.PB2503_07819+
314260.PB2503_01882+
314260.PB2503_10974+
314260.PB2503_03022(PF09731)
314260.PB2503_12304+
314260.PB2503_01712+
314260.PB2503_05382+
314260.PB2503_07544+
314260.PB2503_01702+
314260.PB2503_05757PF02171
314260.PB2503_01052+
314260.PB2503_02242+
314260.PB2503_03527PF02171
314260.PB2503_04987+
314260.PB2503_05637(PF16565)
314260.PB2503_03742+
314260.PB2503_01592+
314260.PB2503_09449+
314260.PB2503_04347+
314260.PB2503_01137+
314260.PB2503_10699+
314260.PB2503_03407+
314260.PB2503_05667+
314260.PB2503_10789+
314260.PB2503_10379+
314260.PB2503_11059(PF04768)
314260.PB2503_10279+
314260.PB2503_01217+
314260.PB2503_00817+
314260.PB2503_10959(PF00102)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 2.3 (23/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================