Metamenu

Effective results for Alteromonas macleodii str. Deep ecotype (eggnog40)

Summary

Number of putative secreted proteins: 107
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 46 eukaryotic-like domains, contained in 107 proteins (8 high, 99 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314275.MADE_1009210(PF01138) (PF03725)(mitochondrial)
314275.MADE_1001895(PF13474)ER
314275.MADE_1005305(PF07209)(mitochondrial)
314275.MADE_1005235(PF14714)(mitochondrial)
314275.MADE_1002220(PF00237)(mitochondrial)
314275.MADE_1012830(PF14714)(mitochondrial)
314275.MADE_1016280PF03151ER
314275.MADE_1020410(PF13474)ER
314275.MADE_1010750(PF00521)mitochondrial
314275.MADE_1010755(PF00521)mitochondrial
314275.MADE_1001580(PF13474)ER
314275.MADE_1001585(PF13474)ER
314275.MADE_1008620(PF01457)ER
314275.MADE_1013110(PF13444)(mitochondrial)
314275.MADE_1017690(PF00368)mitochondrial; (mitochondrial)
314275.MADE_1017110(PF00071)(mitochondrial)
314275.MADE_1002285(PF00237)(mitochondrial)
314275.MADE_1002280(PF00203)(mitochondrial)
314275.MADE_1018245(PF00368)mitochondrial; (mitochondrial)
314275.MADE_1001825(PF13127)ER
314275.MADE_1003475(PF13000)(mitochondrial)
314275.MADE_1016935(PF00071)(mitochondrial)
314275.MADE_1012770(PF07209)(mitochondrial)
314275.MADE_1002215(PF00203)(mitochondrial)
314275.MADE_1020280(PF01138) (PF03725)
314275.MADE_1014245(PF08446) (PF00360)
314275.MADE_1018885(PF02371)(plastid)
314275.MADE_1018575(PF13000)(plastid)
314275.MADE_1017830(PF08446) (PF00360)
314275.MADE_1003165(PF02371)(plastid)
314275.MADE_1011200(PF01138) (PF03725)
314275.MADE_1013275(PF08446) (PF00360)
314275.MADE_1004970(PF01687)(mitochondrial)
314275.MADE_1009250(PF02371)(plastid)
314275.MADE_1003265(PF02371)(plastid)
314275.MADE_1009205(PF01138) (PF03725)
314275.MADE_1018105(PF08446) (PF00360)
314275.MADE_1012680(PF01649)(mitochondrial)
314275.MADE_1011010(PF02371)(plastid)
314275.MADE_1018785(PF02371)(plastid)
314275.MADE_1002275(PF03947) (PF00181)
314275.MADE_1002210(PF03947) (PF00181)
314275.MADE_1017990(PF08275)
314275.MADE_1016480PF08302
314275.MADE_1004460(PF12576)
314275.MADE_1010220(PF10013)not used
314275.MADE_1005130(PF14622)
314275.MADE_1012370(PF10184)
314275.MADE_1012805(PF00958)
314275.MADE_1018490(PF13640)
314275.MADE_1012715(PF13444)
314275.MADE_1002195PF00297
314275.MADE_1002190PF00338
314275.MADE_1002205PF00276
314275.MADE_1002200(PF00573)
314275.MADE_1017475(PF02390)
314275.MADE_1005120(PF06421)
314275.MADE_1012140(PF11815)
314275.MADE_1006245(PF13640)
314275.MADE_1004060(PF00368)
314275.MADE_1010600(PF13444)
314275.MADE_1008965(PF13640)
314275.MADE_1003150(PF02371)
314275.MADE_1003375(PF01142)
314275.MADE_1010760(PF00521)
314275.MADE_1005595(PF03243)
314275.MADE_1001075(PF13640)
314275.MADE_1018715(PF00829)
314275.MADE_1018710(PF01016)
314275.MADE_1013220(PF01502)
314275.MADE_1003770(PF09424)
314275.MADE_1002480(PF00521)
314275.MADE_1012525(PF06421)
314275.MADE_1012670(PF01687)
314275.MADE_1018705(PF01018)
314275.MADE_1003765(PF08275)
314275.MADE_1003345(PF01018)
314275.MADE_1003340(PF01016)
314275.MADE_1013845(PF05686)
314275.MADE_1012515(PF14622)
314275.MADE_1001900(PF13474)
314275.MADE_1004960(PF01649)not used
314275.MADE_1016210(PF02371)
314275.MADE_1005555(PF01502)
314275.MADE_1005825(PF02371)
314275.MADE_1017945(PF08275)
314275.MADE_1002255PF00338
314275.MADE_1017955(PF09424)
314275.MADE_1005535(PF03243)
314275.MADE_1005260(PF00958)
314275.MADE_1008275(PF02912)
314275.MADE_1012330(PF01502)
314275.MADE_1009550(PF13444)
314275.MADE_1002270PF00276
314275.MADE_1008250(PF02912)not used
314275.MADE_1018460(PF02390)
314275.MADE_1002260PF00297
314275.MADE_1002265(PF00573)
314275.MADE_1017980(PF09424)
314275.MADE_1006225(PF13640)
314275.MADE_1003335(PF00829)
314275.MADE_1010985(PF02371)
314275.MADE_1001375(PF02390)
314275.MADE_1018675(PF01142)
314275.MADE_1003100(PF02371)
314275.MADE_1017445(PF13640)
314275.MADE_1012015(PF02371)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================