Metamenu

Effective results for Congregibacter litoralis KT71 (eggnog40)

Summary

Number of putative secreted proteins: 126
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 126 proteins (77 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314285.KT71_13080PF13276 (PF00665)(mitochondrial)
314285.KT71_00165PF13276 (PF00665)(mitochondrial)
314285.KT71_11479PF13276 (PF00665)(mitochondrial)
314285.KT71_18701PF13276 (PF00665)(mitochondrial)
314285.KT71_11459PF13276 (PF00665)(mitochondrial); mitochondrial
314285.KT71_11705PF13276 (PF00665)(mitochondrial); mitochondrial
314285.KT71_09102PF13276 (PF00665)(mitochondrial)
314285.KT71_11344PF13276 (PF00665)(mitochondrial)
314285.KT71_05567PF13276 (PF00665)(mitochondrial)
314285.KT71_15409PF13276 (PF00665)(mitochondrial)
314285.KT71_13120PF13276 (PF00665)(mitochondrial); mitochondrial
314285.KT71_18831PF13276 (PF00665)(mitochondrial)
314285.KT71_13455PF13276 (PF00665)(mitochondrial)
314285.KT71_18476(PF06516)ER
314285.KT71_06162(PF15902)ER
314285.KT71_01505PF01610(mitochondrial)
314285.KT71_18681PF01610(mitochondrial)
314285.KT71_16331PF01610(mitochondrial)
314285.KT71_03277(PF15902)ER
314285.KT71_16286(PF15902)(mitochondrial)
314285.KT71_18307PF01610(mitochondrial)
314285.KT71_14019PF01610(mitochondrial)
314285.KT71_14184PF01610(mitochondrial)
314285.KT71_11294PF13276 (PF00665)(mitochondrial)
314285.KT71_12210(PF00665)mitochondrial
314285.KT71_11449PF13276 (PF00665)(mitochondrial)
314285.KT71_19388(PF03209)(ER)
314285.KT71_11364PF13276 (PF00665)(mitochondrial)
314285.KT71_04335(PF07168)ER
314285.KT71_19769(PF13469)ER
314285.KT71_09872PF13276 (PF00665)(mitochondrial)
314285.KT71_19343(PF03209)ER
314285.KT71_11514PF13276 (PF00665)(mitochondrial)
314285.KT71_02727(PF15902)ER
314285.KT71_09832(PF00665)(mitochondrial)
314285.KT71_08470(PF13469)(plastid)
314285.KT71_04105PF01610(ER)
314285.KT71_11725(PF00665)(mitochondrial)
314285.KT71_02322PF13276(mitochondrial)
314285.KT71_11605PF01610(ER)
314285.KT71_06974PF01610(ER)
314285.KT71_18706PF13276 (PF00665)
314285.KT71_02317(PF00665)(ER)
314285.KT71_09857(PF00665)(mitochondrial)
314285.KT71_18292(PF00665)(mitochondrial)
314285.KT71_02802(PF15902)plastid
314285.KT71_03082(PF03209)(mitochondrial)
314285.KT71_09022PF13276 (PF00665)
314285.KT71_05547(PF14490)(plastid)
314285.KT71_18466(PF06516)(ER)
314285.KT71_12300(PF00154)(mitochondrial)
314285.KT71_04375(PF06516)(mitochondrial)
314285.KT71_13460PF01527
314285.KT71_13115PF01527
314285.KT71_09837PF01527
314285.KT71_15941(PF14490)
314285.KT71_18696PF01527
314285.KT71_12130(PF00154)
314285.KT71_12135(PF00154)
314285.KT71_07299(PF00665)
314285.KT71_05297(PF13469)
314285.KT71_08747PF01610
314285.KT71_08695PF01610not used
314285.KT71_11444PF01527
314285.KT71_12205PF01527
314285.KT71_17186(PF11815)
314285.KT71_18856PF01610
314285.KT71_11474PF01527
314285.KT71_11720(PF14490)
314285.KT71_00170PF01527
314285.KT71_08767PF01610not used
314285.KT71_13435(PF08357)
314285.KT71_01220(PF00665)
314285.KT71_18711PF01527not used
314285.KT71_11464PF01527
314285.KT71_16646(PF03982)
314285.KT71_11730PF01527
314285.KT71_11289PF01527
314285.KT71_13609(PF13469)
314285.KT71_12485PF01610
314285.KT71_11920(PF12576)
314285.KT71_02302PF01610
314285.KT71_07669PF01610
314285.KT71_11710PF01527
314285.KT71_15926(PF13455)
314285.KT71_12150PF01527
314285.KT71_17381(PF10504)
314285.KT71_07674PF01610
314285.KT71_11369PF01527
314285.KT71_18287PF01527
314285.KT71_14289(PF11977)
314285.KT71_09852PF01527
314285.KT71_02762PF01610
314285.KT71_03960(PF13469)
314285.KT71_13939(PF00665)
314285.KT71_13934PF01527
314285.KT71_09107PF01527
314285.KT71_15414PF01527
314285.KT71_06624PF01527
314285.KT71_09867PF01527
314285.KT71_09862PF01527not used
314285.KT71_12190PF13276
314285.KT71_16341PF01610
314285.KT71_01987PF01527
314285.KT71_00335PF01610
314285.KT71_05562PF01527
314285.KT71_18641(PF11815)
314285.KT71_12295PF01527
314285.KT71_06047(PF13469)
314285.KT71_02297PF01610
314285.KT71_12185PF01527
314285.KT71_08600(PF05706)
314285.KT71_01495PF01610
314285.KT71_09642(PF00665)
314285.KT71_12260(PF06258)
314285.KT71_18836PF01527
314285.KT71_11509PF01527
314285.KT71_15269(PF13469)
314285.KT71_09027PF01527
314285.KT71_19824PF01610not used
314285.KT71_17226(PF14336)
314285.KT71_13075PF01527
314285.KT71_02722(PF15902)
314285.KT71_03387(PF06258)
314285.KT71_03890(PF00665)
314285.KT71_11339PF01527

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================