Metamenu

Effective results for Shewanella benthica KT99 (eggnog40)

Summary

Number of putative secreted proteins: 200
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 200 proteins (106 high, 94 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
314608.KT99_18557(PF03222)ER
314608.KT99_04484(PF04654)ER
314608.KT99_00923(PF01695)(ER)
314608.KT99_05522(PF07766)mitochondrial
314608.KT99_00952(PF13384)(mitochondrial)
314608.KT99_00300PF03050(mitochondrial)
314608.KT99_00947(PF01609)(mitochondrial)
314608.KT99_20898(PF01695)mitochondrial
314608.KT99_20249(PF04654)ER
314608.KT99_11418(PF09317)ER
314608.KT99_09588(PF05960)ER
314608.KT99_12489(PF05960)ER
314608.KT99_03854PF03050mitochondrial
314608.KT99_15430PF03050mitochondrial
314608.KT99_08323(PF05960)ER
314608.KT99_16726(PF00665)mitochondrial; (mitochondrial)
314608.KT99_21289PF12762ER
314608.KT99_04364(PF00665)mitochondrial; (mitochondrial)
314608.KT99_18607(PF06468)ER
314608.KT99_19779(PF03222)ER
314608.KT99_05427PF03050(mitochondrial)
314608.KT99_11730(PF09317)ER
314608.KT99_01671(PF01695) (PF00665)
314608.KT99_13672(PF02460)(mitochondrial)
314608.KT99_08984PF13936 (PF00665)
314608.KT99_03327PF13936 (PF00665)
314608.KT99_20923PF13936 (PF00665)
314608.KT99_08248PF13936 (PF00665)
314608.KT99_20903(PF00665)(mitochondrial)
314608.KT99_15470PF12762(mitochondrial)
314608.KT99_14049PF13936 (PF00665)
314608.KT99_05182PF03050(mitochondrial)
314608.KT99_04349PF03050(mitochondrial)
314608.KT99_16716PF13936(mitochondrial)
314608.KT99_14665PF13936 (PF00665)
314608.KT99_17915PF12762(mitochondrial)
314608.KT99_00025PF03050not used
314608.KT99_20736(PF01609)
314608.KT99_18552(PF03222)
314608.KT99_21029PF12762
314608.KT99_20861(PF00849)
314608.KT99_02081(PF00849)
314608.KT99_02176PF12762
314608.KT99_05337(PF12392)
314608.KT99_09239PF12762
314608.KT99_19254PF03050
314608.KT99_08949(PF00665)
314608.KT99_17930(PF02732)
314608.KT99_00035(PF01609)
314608.KT99_12199(PF01609)
314608.KT99_16691PF12762
314608.KT99_17615PF13936
314608.KT99_20506(PF01695)
314608.KT99_20501(PF00849)
314608.KT99_00928PF12762
314608.KT99_03212(PF05960)
314608.KT99_03217(PF05960)
314608.KT99_13517PF01536not used
314608.KT99_12749PF03050
314608.KT99_06447PF03050
314608.KT99_10693PF03050
314608.KT99_10473(PF05548)
314608.KT99_17311(PF00849)
314608.KT99_09968(PF12392)
314608.KT99_19319(PF16983)
314608.KT99_05317(PF00849)
314608.KT99_16841(PF09317)
314608.KT99_15405PF03050
314608.KT99_13807(PF00849)
314608.KT99_04209PF12762
314608.KT99_08964(PF13384)
314608.KT99_11796(PF01695)not used
314608.KT99_00542PF03050
314608.KT99_00547PF03050
314608.KT99_19304(PF00849)
314608.KT99_14415PF12762
314608.KT99_15415PF03050
314608.KT99_20646PF03050
314608.KT99_00779(PF01695)
314608.KT99_04214PF12762
314608.KT99_00206PF03050
314608.KT99_17575PF03050
314608.KT99_11785(PF00665)
314608.KT99_03629(PF00665)
314608.KT99_00575PF12762
314608.KT99_19259PF03050
314608.KT99_05117(PF01609)
314608.KT99_14405(PF01609)
314608.KT99_15420PF03050
314608.KT99_12334PF03050
314608.KT99_03889PF03050
314608.KT99_12339PF03050
314608.KT99_20651PF03050
314608.KT99_16781(PF00665)
314608.KT99_04992(PF00849)
314608.KT99_00216PF03050
314608.KT99_13447(PF00665)
314608.KT99_13442(PF01695)
314608.KT99_04534(PF00665)
314608.KT99_10888PF03050not used
314608.KT99_10083PF12762
314608.KT99_03619(PF01695)
314608.KT99_02692(PF03222)
314608.KT99_02672(PF00665)
314608.KT99_05297(PF01609)
314608.KT99_01102(PF01609)
314608.KT99_00181PF03050
314608.KT99_19139PF03050
314608.KT99_15435PF03050
314608.KT99_19134PF03050
314608.KT99_16791(PF01695)
314608.KT99_16771PF12762
314608.KT99_17685PF12762
314608.KT99_04982(PF01609)
314608.KT99_18602(PF06468)
314608.KT99_17515PF03050
314608.KT99_20913(PF01695)
314608.KT99_01374PF12762
314608.KT99_05132(PF05960)
314608.KT99_05137(PF05960)
314608.KT99_14420(PF00665)
314608.KT99_15440PF03050
314608.KT99_15065(PF00849)
314608.KT99_13207PF13936
314608.KT99_04957(PF00849)
314608.KT99_07603PF12762
314608.KT99_07119PF03050
314608.KT99_08643PF12762
314608.KT99_14450(PF01695)
314608.KT99_19117PF03050not used
314608.KT99_19112PF03050
314608.KT99_16174PF03050
314608.KT99_16179PF03050
314608.KT99_19804PF03050
314608.KT99_12854(PF00849)
314608.KT99_16751(PF01609)
314608.KT99_16756PF12762
314608.KT99_17530(PF13384)
314608.KT99_05937(PF00849)
314608.KT99_19579PF12762
314608.KT99_01132PF12762
314608.KT99_14445(PF00665)
314608.KT99_12064PF13936
314608.KT99_04159(PF05960)not used
314608.KT99_00256PF03050not used
314608.KT99_00251PF03050
314608.KT99_07578(PF03266)
314608.KT99_16721PF13936
314608.KT99_21344PF12762
314608.KT99_04972PF12762
314608.KT99_10993PF03050
314608.KT99_04379PF03050
314608.KT99_10373PF12762
314608.KT99_00411PF12762
314608.KT99_05387PF03050
314608.KT99_21429PF03050not used
314608.KT99_19002PF12762
314608.KT99_19824(PF00849)
314608.KT99_13522PF01536
314608.KT99_17640(PF13384)
314608.KT99_04369PF03050
314608.KT99_19819PF12762
314608.KT99_17396(PF00665)
314608.KT99_09898PF03050not used
314608.KT99_06032(PF00849)
314608.KT99_05177PF03050
314608.KT99_00116PF03050
314608.KT99_20766PF03050
314608.KT99_16639PF03050not used
314608.KT99_16384PF12762
314608.KT99_00856PF03050
314608.KT99_20831(PF00849)
314608.KT99_11048(PF01609)
314608.KT99_09264(PF01609)
314608.KT99_18177(PF13384)
314608.KT99_19159PF13936
314608.KT99_13387(PF01609)
314608.KT99_19849PF03050
314608.KT99_20531PF12762
314608.KT99_03247PF12762not used
314608.KT99_13612PF12762
314608.KT99_10238(PF00849)
314608.KT99_11615PF13936
314608.KT99_02191(PF01609)
314608.KT99_02196(PF01609)
314608.KT99_14395PF03050
314608.KT99_14390PF03050
314608.KT99_08108(PF01609)
314608.KT99_00056(PF01609)not used
314608.KT99_19854PF03050
314608.KT99_16656PF03050
314608.KT99_18547(PF03222)not used
314608.KT99_02977(PF01609)
314608.KT99_07229(PF13384)
314608.KT99_18497PF03050
314608.KT99_19524PF12762
314608.KT99_00453PF03050not used
314608.KT99_08623(PF00665)
314608.KT99_14905PF03050
314608.KT99_08959(PF01695)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================