Metamenu

Effective results for Aliivibrio salmonicida LFI1238 (eggnog40)

Summary

Number of putative secreted proteins: 115
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 115 proteins (66 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316275.VSAL_I1607(PF02112)ER
316275.VSAL_I1544(PF08180)ER
316275.VSAL_I0674(PF01679)ER
316275.VSAL_I0915(PF01679)ER; not used
316275.VSAL_II0023PF03050
316275.VSAL_II0973PF03050
316275.VSAL_II0802(PF13358)
316275.VSAL_II0808(PF13358)
316275.VSAL_I2262PF03050
316275.VSAL_I2264PF03050
316275.VSAL_I1280PF03050
316275.VSAL_I1466(PF13936)
316275.VSAL_I1463(PF13358)
316275.VSAL_I0811PF03050
316275.VSAL_II0348(PF13358)
316275.VSAL_II0748(PF13358)
316275.VSAL_I1672PF03050
316275.VSAL_I1492(PF13358)
316275.VSAL_I0259(PF13936)
316275.VSAL_I0254(PF03102)
316275.VSAL_I2860(PF13358)
316275.VSAL_II0175PF03050
316275.VSAL_I2449(PF13358)
316275.VSAL_I2042PF03050
316275.VSAL_II0751PF03050
316275.VSAL_I1664PF03050
316275.VSAL_I1061PF03050
316275.VSAL_I1930PF03050
316275.VSAL_I2707PF03050
316275.VSAL_II0926(PF13358)
316275.VSAL_II0928PF03050
316275.VSAL_I0394(PF13358)
316275.VSAL_I1723(PF13936)
316275.VSAL_I0291PF03050
316275.VSAL_I2114PF03050
316275.VSAL_I2598PF03050
316275.VSAL_II1082(PF13936)
316275.VSAL_I1737(PF13358)
316275.VSAL_II1064(PF13358)
316275.VSAL_I0772(PF05929)
316275.VSAL_I1912(PF13358)
316275.VSAL_I2611PF03050
316275.VSAL_I1747PF03050
316275.VSAL_II0389PF03050
316275.VSAL_I2037(PF13358)
316275.VSAL_II1090PF03050
316275.VSAL_I0164(PF13936)
316275.VSAL_I0169(PF03102)
316275.VSAL_I2486PF03050
316275.VSAL_II0243PF03050
316275.VSAL_I1027(PF05929)
316275.VSAL_I1205PF03050
316275.VSAL_I1378(PF13358)
316275.VSAL_I1656PF03050
316275.VSAL_I2943PF03050
316275.VSAL_II0098PF03050
316275.VSAL_II0876PF03050
316275.VSAL_II0277(PF13358)
316275.VSAL_II0270PF03050
316275.VSAL_I2306(PF09811)
316275.VSAL_II0470PF03050
316275.VSAL_II1059(PF13358)
316275.VSAL_II1050PF03050
316275.VSAL_I1308(PF13358)
316275.VSAL_I1417PF03050
316275.VSAL_I0783PF03050
316275.VSAL_I1780PF03050
316275.VSAL_II0080PF03050
316275.VSAL_I1576PF03050
316275.VSAL_II0515PF03050
316275.VSAL_II0519(PF13936)
316275.VSAL_I2817(PF05706)
316275.VSAL_I0144PF03050
316275.VSAL_II0219PF03050
316275.VSAL_II0454(PF13936)
316275.VSAL_I1090(PF13936)
316275.VSAL_I0236PF03050
316275.VSAL_I0437PF03050
316275.VSAL_I2178PF03050
316275.VSAL_II0069PF03050
316275.VSAL_II0991PF03050
316275.VSAL_I2684PF03050
316275.VSAL_II0335PF03050
316275.VSAL_II0683(PF13358)
316275.VSAL_II1007PF03050
316275.VSAL_I1425(PF13358)
316275.VSAL_I0115PF03050
316275.VSAL_I3011(PF03102)
316275.VSAL_I2163PF03050
316275.VSAL_I2502(PF10063)
316275.VSAL_II0833PF03050
316275.VSAL_II0236PF03050
316275.VSAL_II1018PF03050
316275.VSAL_I1633(PF13358)
316275.VSAL_I1637(PF13936)
316275.VSAL_I0456(PF13358)
316275.VSAL_I0214PF03050
316275.VSAL_I2759PF03050
316275.VSAL_I2753PF03050
316275.VSAL_II0046PF03050
316275.VSAL_I2404PF03050
316275.VSAL_II0229PF03050
316275.VSAL_I1621(PF13358)
316275.VSAL_I1442PF03050
316275.VSAL_I0463(PF13358)
316275.VSAL_II0917(PF13358)
316275.VSAL_I2953PF03050
316275.VSAL_II0031PF03050
316275.VSAL_I2250PF03050
316275.VSAL_I1617(PF13358)
316275.VSAL_I1293PF03050
316275.VSAL_I0677(PF01786)
316275.VSAL_I1478(PF13358)
316275.VSAL_I2882PF03050
316275.VSAL_I2732PF03050

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.25 (18/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================