Effective results for Escherichia coli str. K-12 substr. W3110 (eggnog40)
Summary
Number of putative secreted proteins: 202
- Predicted by T4SEpre: 71
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 131 proteins (9 high, 122 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 316407.85676011 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85676539 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85674403 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85675299 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85674688 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85675790 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.1742188 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85675316 | (PF13276) (PF00665) | mitochondrial | |||
| 316407.1736552 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85674822 | (PF13276) (PF00665) | mitochondrial | |||
| 316407.1736719 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85676327 | (PF13276) (PF00665) | mitochondrial | |||
| 316407.2447044 | (PF13276) (PF00665) | mitochondrial | |||
| 316407.85674733 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85675940 | (PF00577) | (ER) | |||
| 316407.85674444 | (PF13276) (PF00665) | (mitochondrial) | |||
| 316407.85675847 | (PF01527) | (ER) | |||
| 316407.85676010 | (PF00577) | ER | |||
| 316407.85675412 | (PF10662) | (mitochondrial) | |||
| 316407.1651481 | (PF00328) | ER | |||
| 316407.1799729 | (PF00577) | ER | |||
| 316407.1742284 | (PF01527) | (ER) | |||
| 316407.1736794 | (PF13276) (PF00665) | (mitochondrial) | |||
| 316407.85674378 | (PF05708) | ER | |||
| 316407.85675775 | (PF01276) (PF03711) | (plastid) | |||
| 316407.1736655 | (PF05598) (PF01609) | mitochondrial | |||
| 316407.85677018 | (PF01527) | (ER) | |||
| 316407.1651498 | (PF00328) | ER | |||
| 316407.85676123 | (PF05708) | ER | |||
| 316407.1736667 | (PF01527) | (ER) | |||
| 316407.85674747 | (PF00577) | ER | |||
| 316407.85677060 | (PF00577) | (mitochondrial) | |||
| 316407.85674501 | (PF01527) | (ER) | |||
| 316407.85675029 | (PF00665) | mitochondrial | |||
| 316407.85674513 | (PF13276) (PF00665) | (mitochondrial) | |||
| 316407.85675321 | (PF02415) | ER; (ER) | |||
| 316407.85676110 | (PF01228) | (mitochondrial) | |||
| 316407.85675675 | (PF01527) | (ER) | |||
| 316407.85674819 | (PF13276) (PF00665) | (mitochondrial) | |||
| 316407.85674676 | (PF13276) (PF00665) | (mitochondrial) | |||
| 316407.85676333 | (PF03222) | (ER) | |||
| 316407.1736569 | (PF03222) | ER; (ER) | |||
| 316407.85675224 | (PF00577) | ER | |||
| 316407.1651595 | (PF01204) | ER | |||
| 316407.85674862 | (PF13436) | (ER) | |||
| 316407.85675880 | (PF01204) | ER | |||
| 316407.85675957 | (PF03222) | (ER); ER | |||
| 316407.1651641 | (PF13276) (PF00665) | ||||
| 316407.85674930 | (PF05598) (PF01609) | ||||
| 316407.85677025 | (PF01527) | (mitochondrial) | |||
| 316407.85674374 | (PF01276) (PF03711) | ||||
| 316407.85675913 | (PF05598) (PF01609) | ||||
| 316407.85677019 | (PF13276) (PF00665) | ||||
| 316407.85676486 | (PF13276) (PF00665) | ||||
| 316407.1736664 | (PF13276) (PF00665) | ||||
| 316407.85676836 | (PF05598) (PF01609) | ||||
| 316407.85674502 | (PF13276) (PF00665) | ||||
| 316407.1651300 | (PF01276) (PF03711) | ||||
| 316407.85675661 | (PF03222) | (ER) | |||
| 316407.85675848 | (PF13276) (PF00665) | ||||
| 316407.85676869 | (PF01276) (PF03711) | ||||
| 316407.85676884 | (PF01276) (PF03711) | ||||
| 316407.85675674 | (PF13276) (PF00665) | ||||
| 316407.85675216 | (PF05598) (PF01609) | ||||
| 316407.1799794 | (PF05524) | (mitochondrial) | |||
| 316407.85676335 | (PF05598) (PF01609) | ||||
| 316407.85676332 | (PF05598) (PF01609) | ||||
| 316407.85676331 | (PF03222) | (ER) | |||
| 316407.85674726 | (PF05598) (PF01609) | ||||
| 316407.85674920 | PF14555 | not used | |||
| 16407.173654 | + | - | |||
| 316407.85674443 | (PF01527) | ||||
| 16407.8567570 | + | - | |||
| 316407.85675849 | (PF00577) | ||||
| 316407.4062299 | (PF01609) | ||||
| 16407.856749 | + | - | |||
| 16407.180000 | + | - | |||
| 316407.85677022 | (PF01609) | ||||
| 316407.85677026 | (PF00665) | ||||
| 316407.85675391 | (PF01609) | ||||
| 16407.8567693 | + | - | |||
| 16407.8567682 | + | - | |||
| 316407.1799728 | (PF00577) | ||||
| 16407.856754 | + | - | |||
| 316407.1742285 | (PF00665) | ||||
| 16407.8567549 | + | - | |||
| 16407.8567547 | + | - | |||
| 16407.8567692 | + | - | |||
| 16407.173685 | + | - | |||
| 316407.85674883 | (PF01527) | ||||
| 316407.85675912 | (PF01228) | ||||
| 316407.85675915 | (PF03222) | ||||
| 316407.85676937 | (PF03738) | ||||
| 316407.85677042 | (PF00834) | ||||
| 316407.85674770 | (PF01228) | ||||
| 316407.85674411 | (PF00665) | ||||
| 316407.85674418 | PF03400 | ||||
| 16407.8567502 | + | - | |||
| 16407.8567596 | + | - | |||
| 16407.8567433 | + | - | |||
| 316407.85676559 | (PF01609) | ||||
| 16407.17423 | + | - | |||
| 16407.8567550 | + | - | |||
| 316407.85674349 | (PF00577) | ||||
| 316407.1651483 | PF03400 | ||||
| 316407.85676838 | (PF00834) | ||||
| 316407.85674400 | (PF00665) | ||||
| 316407.85674408 | PF03400 | ||||
| 16407.8567544 | + | - | |||
| 16407.174257 | + | - | |||
| 316407.85674976 | (PF01609) | ||||
| 316407.85674977 | (PF01609) | ||||
| 16407.2123901 | + | - | |||
| 316407.85674995 | (PF00577) | ||||
| 16407.406251 | + | - | |||
| 16407.490294 | + | - | |||
| 16407.8567497 | + | - | |||
| 316407.85675334 | (PF02902) | ||||
| 316407.85676598 | PF03400 | ||||
| 16407.8567558 | + | - | |||
| 316407.1799983 | (PF01228) | ||||
| 316407.1742372 | (PF01609) | ||||
| 316407.85674514 | (PF01527) | ||||
| 16407.8567461 | + | - | |||
| 16407.8567464 | + | - | |||
| 16407.8567466 | + | - | |||
| 16407.8567597 | + | - | |||
| 16407.8567659 | + | - | |||
| 316407.1651427 | (PF01228) | ||||
| 16407.8567592 | + | - | |||
| 316407.85676113 | (PF05524) | ||||
| 316407.85675645 | (PF05524) | ||||
| 316407.85675796 | (PF03738) | ||||
| 16407.8567475 | + | - | |||
| 16407.174203 | + | - | |||
| 16407.8567647 | + | - | |||
| 316407.85675317 | (PF01527) | ||||
| 16407.8567660 | + | - | |||
| 16407.8567506 | + | - | |||
| 16407.180005 | + | - | |||
| 16407.8567446 | + | - | |||
| 16407.8567443 | + | - | |||
| 316407.1799835 | (PF05524) | ||||
| 16407.8567702 | + | - | |||
| 16407.8567705 | + | - | |||
| 16407.8567709 | + | - | |||
| 316407.4062211 | (PF01609) | ||||
| 316407.85676655 | (PF00834) | ||||
| 316407.85675667 | (PF07720) | ||||
| 16407.8567614 | + | - | |||
| 316407.85674820 | (PF01527) | ||||
| 316407.85674823 | (PF01527) | ||||
| 16407.406235 | + | - | |||
| 316407.85675841 | (PF03738) | ||||
| 16407.1736 | + | - | |||
| 16407.8567603 | + | - | |||
| 316407.85676328 | (PF01527) | ||||
| 16407.8567598 | + | - | |||
| 316407.85674675 | (PF01527) | ||||
| 16407.174210 | + | - | |||
| 16407.8567586 | + | - | |||
| 16407.17368 | + | - | |||
| 16407.173664 | + | - | |||
| 316407.85675152 | (PF05708) | ||||
| 316407.85676417 | (PF06176) | ||||
| 16407.8567619 | + | - | |||
| 16407.8567616 | + | - | |||
| 316407.85676525 | (PF01204) | ||||
| 316407.85675214 | (PF01527) | ||||
| 16407.8567670 | + | - | |||
| 16407.8567582 | + | - | |||
| 16407.8567490 | + | - | |||
| 316407.85674669 | (PF00577) | ||||
| 16407.8567623 | + | - | |||
| 16407.8567621 | + | - | |||
| 316407.85676622 | (PF05189) | ||||
| 316407.85674872 | (PF05524) | ||||
| 16407.406266 | + | - | |||
| 16407.406267 | + | - | |||
| 16407.8567504 | + | - | |||
| 316407.1799658 | PF03400 | ||||
| 316407.1742221 | PF04181 | not used | |||
| 16407.8567542 | + | - | |||
| 16407.2132191 | + | - | |||
| 16407.8567509 | + | - | |||
| 316407.4902998 | (PF01527) | ||||
| 316407.4902991 | (PF01527) | ||||
| 16407.8567694 | + | - | |||
| 16407.8567462 | + | - | |||
| 16407.8567630 | + | - | |||
| 16407.8567565 | + | - | |||
| 316407.85675188 | (PF10662) | ||||
| 316407.85676505 | (PF03222) | ||||
| 16407.8567583 | + | - | |||
| 316407.85674286 | PF03400 | ||||
| 316407.85674283 | (PF01609) | ||||
| 16407.8567513 | + | - | |||
| 316407.4062508 | (PF00577) | ||||
| 16407.406277 | + | - | |||
| 16407.856767 | + | - | |||
| 16407.173665 | + | - | |||
| 316407.85676424 | PF09612 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.375 (3/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.0 (0/10 KEGG proteins)
Estimated copy number = 0.375 (3/8 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
