Effective results for Escherichia coli str. K-12 substr. W3110 (eggnog40)

Summary

Number of putative secreted proteins: 202
- Predicted by T4SEpre: 71
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 131 proteins (9 high, 122 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316407.85676011(PF05598) (PF01609)mitochondrial
316407.85676539(PF05598) (PF01609)mitochondrial
316407.85674403(PF05598) (PF01609)mitochondrial
316407.85675299(PF05598) (PF01609)mitochondrial
316407.85674688(PF05598) (PF01609)mitochondrial
316407.85675790(PF05598) (PF01609)mitochondrial
316407.1742188(PF05598) (PF01609)mitochondrial
316407.85675316(PF13276) (PF00665)mitochondrial
316407.1736552(PF05598) (PF01609)mitochondrial
316407.85674822(PF13276) (PF00665)mitochondrial
316407.1736719(PF05598) (PF01609)mitochondrial
316407.85676327(PF13276) (PF00665)mitochondrial
316407.2447044(PF13276) (PF00665)mitochondrial
316407.85674733(PF05598) (PF01609)mitochondrial
316407.85675940(PF00577)(ER)
316407.85674444(PF13276) (PF00665)(mitochondrial)
316407.85675847(PF01527)(ER)
316407.85676010(PF00577)ER
316407.85675412(PF10662)(mitochondrial)
316407.1651481(PF00328)ER
316407.1799729(PF00577)ER
316407.1742284(PF01527)(ER)
316407.1736794(PF13276) (PF00665)(mitochondrial)
316407.85674378(PF05708)ER
316407.85675775(PF01276) (PF03711)(plastid)
316407.1736655(PF05598) (PF01609)mitochondrial
316407.85677018(PF01527)(ER)
316407.1651498(PF00328)ER
316407.85676123(PF05708)ER
316407.1736667(PF01527)(ER)
316407.85674747(PF00577)ER
316407.85677060(PF00577)(mitochondrial)
316407.85674501(PF01527)(ER)
316407.85675029(PF00665)mitochondrial
316407.85674513(PF13276) (PF00665)(mitochondrial)
316407.85675321(PF02415)ER; (ER)
316407.85676110(PF01228)(mitochondrial)
316407.85675675(PF01527)(ER)
316407.85674819(PF13276) (PF00665)(mitochondrial)
316407.85674676(PF13276) (PF00665)(mitochondrial)
316407.85676333(PF03222)(ER)
316407.1736569(PF03222)ER; (ER)
316407.85675224(PF00577)ER
316407.1651595(PF01204)ER
316407.85674862(PF13436)(ER)
316407.85675880(PF01204)ER
316407.85675957(PF03222)(ER); ER
316407.1651641(PF13276) (PF00665)
316407.85674930(PF05598) (PF01609)
316407.85677025(PF01527)(mitochondrial)
316407.85674374(PF01276) (PF03711)
316407.85675913(PF05598) (PF01609)
316407.85677019(PF13276) (PF00665)
316407.85676486(PF13276) (PF00665)
316407.1736664(PF13276) (PF00665)
316407.85676836(PF05598) (PF01609)
316407.85674502(PF13276) (PF00665)
316407.1651300(PF01276) (PF03711)
316407.85675661(PF03222)(ER)
316407.85675848(PF13276) (PF00665)
316407.85676869(PF01276) (PF03711)
316407.85676884(PF01276) (PF03711)
316407.85675674(PF13276) (PF00665)
316407.85675216(PF05598) (PF01609)
316407.1799794(PF05524)(mitochondrial)
316407.85676335(PF05598) (PF01609)
316407.85676332(PF05598) (PF01609)
316407.85676331(PF03222)(ER)
316407.85674726(PF05598) (PF01609)
316407.85674920PF14555not used
16407.173654+-
316407.85674443(PF01527)
16407.8567570+-
316407.85675849(PF00577)
316407.4062299(PF01609)
16407.856749+-
16407.180000+-
316407.85677022(PF01609)
316407.85677026(PF00665)
316407.85675391(PF01609)
16407.8567693+-
16407.8567682+-
316407.1799728(PF00577)
16407.856754+-
316407.1742285(PF00665)
16407.8567549+-
16407.8567547+-
16407.8567692+-
16407.173685+-
316407.85674883(PF01527)
316407.85675912(PF01228)
316407.85675915(PF03222)
316407.85676937(PF03738)
316407.85677042(PF00834)
316407.85674770(PF01228)
316407.85674411(PF00665)
316407.85674418PF03400
16407.8567502+-
16407.8567596+-
16407.8567433+-
316407.85676559(PF01609)
16407.17423+-
16407.8567550+-
316407.85674349(PF00577)
316407.1651483PF03400
316407.85676838(PF00834)
316407.85674400(PF00665)
316407.85674408PF03400
16407.8567544+-
16407.174257+-
316407.85674976(PF01609)
316407.85674977(PF01609)
16407.2123901+-
316407.85674995(PF00577)
16407.406251+-
16407.490294+-
16407.8567497+-
316407.85675334(PF02902)
316407.85676598PF03400
16407.8567558+-
316407.1799983(PF01228)
316407.1742372(PF01609)
316407.85674514(PF01527)
16407.8567461+-
16407.8567464+-
16407.8567466+-
16407.8567597+-
16407.8567659+-
316407.1651427(PF01228)
16407.8567592+-
316407.85676113(PF05524)
316407.85675645(PF05524)
316407.85675796(PF03738)
16407.8567475+-
16407.174203+-
16407.8567647+-
316407.85675317(PF01527)
16407.8567660+-
16407.8567506+-
16407.180005+-
16407.8567446+-
16407.8567443+-
316407.1799835(PF05524)
16407.8567702+-
16407.8567705+-
16407.8567709+-
316407.4062211(PF01609)
316407.85676655(PF00834)
316407.85675667(PF07720)
16407.8567614+-
316407.85674820(PF01527)
316407.85674823(PF01527)
16407.406235+-
316407.85675841(PF03738)
16407.1736+-
16407.8567603+-
316407.85676328(PF01527)
16407.8567598+-
316407.85674675(PF01527)
16407.174210+-
16407.8567586+-
16407.17368+-
16407.173664+-
316407.85675152(PF05708)
316407.85676417(PF06176)
16407.8567619+-
16407.8567616+-
316407.85676525(PF01204)
316407.85675214(PF01527)
16407.8567670+-
16407.8567582+-
16407.8567490+-
316407.85674669(PF00577)
16407.8567623+-
16407.8567621+-
316407.85676622(PF05189)
316407.85674872(PF05524)
16407.406266+-
16407.406267+-
16407.8567504+-
316407.1799658PF03400
316407.1742221PF04181not used
16407.8567542+-
16407.2132191+-
16407.8567509+-
316407.4902998(PF01527)
316407.4902991(PF01527)
16407.8567694+-
16407.8567462+-
16407.8567630+-
16407.8567565+-
316407.85675188(PF10662)
316407.85676505(PF03222)
16407.8567583+-
316407.85674286PF03400
316407.85674283(PF01609)
16407.8567513+-
316407.4062508(PF00577)
16407.406277+-
16407.856767+-
16407.173665+-
316407.85676424PF09612

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================