Effective results for Aster yellows witches-broom phytoplasma AYWB (eggnog40)

Summary

Number of putative secreted proteins: 41
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 41 proteins (17 high, 24 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
322098.AYWB_219PF08275 (PF13155)ER; (ER)
322098.AYWB_573(PF11074)mitochondrial
322098.AYWB_389PF03796ER
322098.AYWB_178PF08275 (PF13155)(ER)
322098.AYWB_616PF08275 (PF13155)
322098.AYWB_285PF08275 (PF13155)
322098.AYWB_108PF08275 (PF13155)
322098.AYWB_086PF08275(mitochondrial)
322098.AYWB_282(PF02223)
322098.AYWB_378(PF00436)
322098.AYWB_151PF00799
322098.AYWB_150(PF00436)
322098.AYWB_617PF03796
322098.AYWB_533(PF13246)
322098.AYWB_284PF03796
322098.AYWB_193(PF00436)
322098.AYWB_652(PF01795)
322098.AYWB_653(PF01795)
322098.AYWB_268PF00799
322098.AYWB_492(PF02223)
322098.AYWB_223(PF09588)
322098.AYWB_222(PF02223)
322098.AYWB_220PF03796
322098.AYWB_381(PF00436)
322098.AYWB_182(PF09588)
322098.AYWB_181(PF02223)
322098.AYWB_078PF03796
322098.AYWB_077PF03796
322098.AYWB_074(PF02223)
322098.AYWB_179PF03796
322098.AYWB_270PF00799not used
322098.AYWB_271(PF00436)
322098.AYWB_007PF03796
322098.AYWB_004(PF00436)not used
322098.AYWB_232(PF00436)
322098.AYWB_048(PF13155)
322098.AYWB_087(PF13155)
322098.AYWB_018(PF13246)
322098.AYWB_421(PF09419)
322098.AYWB_209(PF00436)not used
322098.AYWB_113(PF09588)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================