Metamenu

Effective results for Finegoldia magna ATCC 29328 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 23 proteins (0 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
334413.FMG_1072(PF01813)mitochondrial
334413.FMG_0072(PF11070)ER
334413.FMG_1109(PF00112)ER
334413.FMG_1147(PF16199)(mitochondrial)
334413.FMG_1438(PF04383)mitochondrial
334413.FMG_1110(PF00112)ER
334413.FMG_1074(PF16886)
334413.FMG_1075(PF01990)
334413.FMG_1076(PF01992)
334413.FMG_1077(PF01991)
334413.FMG_1294(PF06777)
334413.FMG_1079(PF01496)
334413.FMG_0847(PF16199)
334413.FMG_1171(PF01992)
334413.FMG_1170(PF01496)
334413.FMG_1306(PF12646)
334413.FMG_1168(PF01990)
334413.FMG_1166(PF16886)
334413.FMG_1164(PF01813)
334413.FMG_1439(PF04383)
334413.FMG_1514(PF14512)
334413.FMG_1525(PF16199)
334413.FMG_0648(PF14512)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================