Metamenu

Effective results for Nitrosomonas eutropha C91 (eggnog40)

Summary

Number of putative secreted proteins: 126
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 126 proteins (51 high, 75 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
335283.Neut_0014(PF07731) (PF07732)(mitochondrial)
335283.Neut_0021(PF07731) (PF07732)(mitochondrial); (plastid)
335283.Neut_0013PF13276 PF00665mitochondrial
335283.Neut_2192PF13276 PF00665(mitochondrial)
335283.Neut_1406(PF07731) (PF07732)(ER)
335283.Neut_0887PF13276 PF00665(mitochondrial)
335283.Neut_0710(PF07731) (PF07732)ER
335283.Neut_1684(PF03092)(ER)
335283.Neut_1746PF00665(mitochondrial); (plastid)
335283.Neut_0978PF00665(mitochondrial); (plastid)
335283.Neut_0906(PF14397)mitochondrial
335283.Neut_0907PF01195mitochondrial
335283.Neut_2282(PF13436)ER
335283.Neut_1862PF00665(mitochondrial); (plastid)
335283.Neut_1403(PF07732)ER
335283.Neut_1872(PF07732)ER
335283.Neut_1278PF00665(mitochondrial); (plastid)
335283.Neut_1814PF13276 PF00665
335283.Neut_1819PF13276 PF00665
335283.Neut_2186PF00665(mitochondrial)
335283.Neut_1321PF13276 PF00665
335283.Neut_2410PF00665(mitochondrial)
335283.Neut_0303PF13276 PF00665
335283.Neut_1992PF00665(mitochondrial)
335283.Neut_0311(PF07731) (PF07732)
335283.Neut_1375PF13276 PF00665
335283.Neut_1371PF13276 PF00665
335283.Neut_1378(PF13436)(ER)
335283.Neut_0485PF00665(mitochondrial)
335283.Neut_1961PF00665(mitochondrial)
335283.Neut_2501PF13276 PF00665
335283.Neut_1212PF00665(mitochondrial)
335283.Neut_2189PF13276 PF00665
335283.Neut_0256(PF01609)(mitochondrial)
335283.Neut_0908PF01195(mitochondrial)
335283.Neut_2195PF13276 PF00665
335283.Neut_2197PF00665(mitochondrial)
335283.Neut_2452PF13276 PF00665
335283.Neut_0631PF00665(mitochondrial)
335283.Neut_1888PF13276 PF00665
335283.Neut_2497PF00665(mitochondrial)
335283.Neut_1524PF00665(mitochondrial)
335283.Neut_2268PF00665(mitochondrial)
335283.Neut_1844PF00665(mitochondrial)
335283.Neut_1848PF00665(mitochondrial)
335283.Neut_1068PF00665(ER)
335283.Neut_1069PF00665(mitochondrial)
335283.Neut_1067PF13276 PF00665
335283.Neut_2001PF13276 PF00665
335283.Neut_1855PF00665(mitochondrial)
335283.Neut_1074PF13276 PF00665
335283.Neut_1720PF13276 PF00665
335283.Neut_1825PF13276 PF00665
335283.Neut_1624PF13276 PF00665
335283.Neut_0983PF13276 PF00665
335283.Neut_1052(PF07731) (PF07732)
335283.Neut_1931PF00665(mitochondrial)
335283.Neut_1813(PF01527)
335283.Neut_1818PF00665
335283.Neut_0327(PF14397)
335283.Neut_0216(PF01609)
335283.Neut_1322(PF01527)
335283.Neut_1142PF01195
335283.Neut_2362(PF01609)
335283.Neut_2206(PF01609)
335283.Neut_0332PF00665
335283.Neut_2418(PF13384)
335283.Neut_2414(PF13384)
335283.Neut_0304(PF01527)
335283.Neut_0012(PF01527)
335283.Neut_0016(PF01609)
335283.Neut_1994(PF01609)
335283.Neut_2407(PF01609)
335283.Neut_0313(PF12483)
335283.Neut_1374(PF01527)
335283.Neut_1370(PF01527)
335283.Neut_1757(PF13384)
335283.Neut_1980(PF01609)
335283.Neut_2502(PF01609)
335283.Neut_2500(PF01527)
335283.Neut_0360(PF01527)
335283.Neut_0361PF00665
335283.Neut_1421(PF01609)
335283.Neut_1693(PF01527)not used
335283.Neut_1224(PF01527)
335283.Neut_2422(PF01609)
335283.Neut_0376(PF01609)
335283.Neut_0905(PF14397)
335283.Neut_2190(PF01527)
335283.Neut_2194(PF01527)
335283.Neut_2198(PF01609)
335283.Neut_2453(PF01527)
335283.Neut_1233(PF01609)
335283.Neut_1889(PF01527)
335283.Neut_2449(PF13384)
335283.Neut_1860PF00665
335283.Neut_0752(PF13384)
335283.Neut_0358(PF01527)
335283.Neut_0355(PF13384)
335283.Neut_0625PF00665
335283.Neut_1719(PF01527)
335283.Neut_2270(PF13384)
335283.Neut_2496(PF01609)
335283.Neut_2499(PF01609)
335283.Neut_1255(PF13384)
335283.Neut_1675(PF13384)
335283.Neut_0939(PF01609)
335283.Neut_2267(PF13384)
335283.Neut_1846(PF01609)
335283.Neut_1066(PF01527)
335283.Neut_2002(PF01527)
335283.Neut_1079(PF00862)
335283.Neut_1070PF13276
335283.Neut_0885(PF01527)
335283.Neut_0886(PF01527)
335283.Neut_0883(PF01609)
335283.Neut_1826(PF01527)
335283.Neut_1820(PF01527)
335283.Neut_1599(PF01609)
335283.Neut_0984(PF01527)
335283.Neut_0985(PF01609)
335283.Neut_2347(PF01527)
335283.Neut_1056(PF01609)
335283.Neut_0048(PF07731)
335283.Neut_1929(PF01609)
335283.Neut_2210(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================