Effective results for Pelobacter carbinolicus DSM 2380 (eggnog40)
Summary
Number of putative secreted proteins: 163
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 45 eukaryotic-like domains, contained in 163 proteins (5 high, 158 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 338963.Pcar_0208 | (PF10589) (PF01512) (PF10531) | (mitochondrial) | |||
| 338963.Pcar_1239 | (PF17147) (PF01855) | (mitochondrial) | |||
| 338963.Pcar_1849 | (PF09835) | mitochondrial | |||
| 338963.Pcar_1844 | (PF10589) (PF01512) (PF10531) | ||||
| 338963.Pcar_1604 | (PF10589) (PF01512) (PF10531) | ||||
| 338963.Pcar_1605 | (PF10588) (PF02256) (PF02906) | ||||
| 338963.Pcar_2708 | (PF10589) (PF01512) (PF10531) | ||||
| 338963.Pcar_3135 | (PF00430) | ER | |||
| 338963.Pcar_3136 | (PF00430) | ER; (ER) | |||
| 338963.Pcar_0834 | (PF10589) (PF01512) (PF10531) | ||||
| 338963.Pcar_0945 | (PF00430) | ER | |||
| 338963.Pcar_1633 | (PF10588) (PF02256) (PF02906) | ||||
| 338963.Pcar_0824 | (PF10143) | (ER) | |||
| 338963.Pcar_0952 | (PF00137) | ER | |||
| 338963.Pcar_0951 | (PF00119) | ER | |||
| 338963.Pcar_0494 | (PF04055) | mitochondrial | |||
| 338963.Pcar_0944 | (PF00430) | ER; (ER) | |||
| 338963.Pcar_1634 | (PF10589) (PF01512) (PF10531) | ||||
| 338963.Pcar_2989 | (PF02874) | (ER) | |||
| 338963.Pcar_2195 | (PF04055) | (mitochondrial) | |||
| 338963.Pcar_2994 | (PF00137) | ER | |||
| 338963.Pcar_0016 | (PF00137) | ER | |||
| 338963.Pcar_0015 | (PF00119) | ER | |||
| 338963.Pcar_2502 | (PF10588) (PF02906) (PF02256) | ||||
| 338963.Pcar_2299 | (PF09835) | mitochondrial | |||
| 338963.Pcar_0914 | (PF10589) (PF01512) (PF10531) | ||||
| 338963.Pcar_1538 | (PF10531) | ER | |||
| 338963.Pcar_2079 | (PF04055) | (mitochondrial) | |||
| 338963.Pcar_2487 | (PF04055) | mitochondrial | |||
| 338963.Pcar_1474 | PF04184 | mitochondrial | |||
| 338963.Pcar_2653 | (PF09835) | ER | |||
| 338963.Pcar_0136 | PF14853 | ER | |||
| 338963.Pcar_0279 | (PF11074) | (mitochondrial) | |||
| 338963.Pcar_2960 | (PF04055) | mitochondrial; (mitochondrial) | |||
| 338963.Pcar_0263 | (PF01512) (PF10531) | ||||
| 338963.Pcar_2836 | (PF05189) (PF01137) | ||||
| 338963.Pcar_1034 | (PF17147) (PF01855) | ||||
| 338963.Pcar_1030 | (PF17147) (PF01855) | ||||
| 338963.Pcar_2768 | (PF13394) (PF04055) | ||||
| 338963.Pcar_3133 | (PF00306) (PF02874) | ||||
| 338963.Pcar_1631 | (PF06968) (PF04055) | ||||
| 338963.Pcar_1545 | (PF17147) (PF01855) | ||||
| 338963.Pcar_1369 | (PF13394) (PF04055) | ||||
| 338963.Pcar_0947 | (PF00306) (PF02874) | ||||
| 338963.Pcar_2520 | (PF13394) (PF04055) | ||||
| 338963.Pcar_1394 | (PF13394) (PF04055) | ||||
| 338963.Pcar_3100 | (PF01715) | (mitochondrial) | |||
| 338963.Pcar_0377 | (PF17147) (PF01855) | ||||
| 338963.Pcar_2995 | (PF00430) | (ER) | |||
| 338963.Pcar_2996 | (PF00306) (PF02874) | ||||
| 338963.Pcar_1695 | (PF13394) (PF04055) | ||||
| 338963.Pcar_0340 | (PF06968) (PF04055) | ||||
| 338963.Pcar_2503 | (PF10589) (PF14691) | ||||
| 338963.Pcar_2273 | (PF00075) | (ER) | |||
| 338963.Pcar_2515 | (PF13394) (PF04055) | ||||
| 338963.Pcar_2495 | (PF05189) (PF01137) | ||||
| 338963.Pcar_0608 | (PF06968) (PF04055) | ||||
| 338963.Pcar_1642 | (PF13394) (PF04055) | ||||
| 338963.Pcar_2660 | (PF13394) (PF04055) | ||||
| 338963.Pcar_0400 | PF07260 | (ER) | |||
| 338963.Pcar_1458 | (PF06968) (PF04055) | ||||
| 338963.Pcar_0084 | (PF02915) | ||||
| 338963.Pcar_1846 | (PF01257) | ||||
| 338963.Pcar_1607 | (PF04055) | ||||
| 338963.Pcar_1602 | (PF01257) | ||||
| 338963.Pcar_2022 | (PF04055) | ||||
| 338963.Pcar_2117 | (PF01855) | ||||
| 338963.Pcar_2346 | (PF02915) | ||||
| 338963.Pcar_0676 | (PF16983) | ||||
| 338963.Pcar_1857 | (PF04055) | ||||
| 338963.Pcar_1859 | (PF01592) | ||||
| 338963.Pcar_0320 | (PF04055) | ||||
| 338963.Pcar_1586 | (PF04055) | ||||
| 338963.Pcar_1033 | (PF00731) | ||||
| 338963.Pcar_2163 | (PF04455) | ||||
| 338963.Pcar_3149 | (PF04055) | ||||
| 338963.Pcar_0209 | (PF10588) | ||||
| 338963.Pcar_0207 | (PF01257) | ||||
| 338963.Pcar_0204 | (PF00075) | ||||
| 338963.Pcar_1483 | (PF14691) | ||||
| 338963.Pcar_1314 | (PF02915) | ||||
| 338963.Pcar_1315 | (PF02915) | ||||
| 338963.Pcar_0935 | (PF14938) | ||||
| 338963.Pcar_2312 | (PF02906) | ||||
| 338963.Pcar_2797 | (PF02915) | ||||
| 338963.Pcar_2400 | (PF00731) | ||||
| 338963.Pcar_3130 | (PF02823) | ||||
| 338963.Pcar_3131 | (PF02874) | ||||
| 338963.Pcar_3132 | (PF00231) | ||||
| 338963.Pcar_0057 | (PF03063) | ||||
| 338963.Pcar_0051 | (PF01592) | ||||
| 338963.Pcar_0835 | (PF10588) | ||||
| 338963.Pcar_0837 | (PF03063) | ||||
| 338963.Pcar_0833 | (PF01257) | ||||
| 338963.Pcar_1835 | (PF04055) | ||||
| 338963.Pcar_1833 | (PF02906) | ||||
| 338963.Pcar_1832 | (PF01257) | ||||
| 338963.Pcar_0300 | PF04457 | ||||
| 338963.Pcar_0308 | (PF04055) | ||||
| 338963.Pcar_0943 | (PF04055) | ||||
| 338963.Pcar_0948 | (PF00231) | ||||
| 338963.Pcar_0949 | (PF02874) | ||||
| 338963.Pcar_1636 | (PF01257) | ||||
| 338963.Pcar_1632 | (PF04055) | ||||
| 338963.Pcar_1125 | (PF04055) | ||||
| 338963.Pcar_1124 | (PF04055) | ||||
| 338963.Pcar_1305 | (PF01715) | ||||
| 338963.Pcar_0315 | (PF01592) | ||||
| 338963.Pcar_0225 | (PF04055) | ||||
| 338963.Pcar_0950 | (PF02823) | ||||
| 338963.Pcar_0221 | (PF14691) | ||||
| 338963.Pcar_2089 | (PF04055) | ||||
| 338963.Pcar_2884 | (PF04055) | ||||
| 338963.Pcar_0034 | (PF04055) | ||||
| 338963.Pcar_0495 | (PF04055) | ||||
| 338963.Pcar_1567 | (PF01855) | ||||
| 338963.Pcar_1214 | (PF04055) | ||||
| 338963.Pcar_0549 | (PF12483) | ||||
| 338963.Pcar_2521 | (PF04055) | ||||
| 338963.Pcar_0159 | (PF03266) | ||||
| 338963.Pcar_0158 | (PF04055) | ||||
| 338963.Pcar_0021 | (PF01592) | ||||
| 338963.Pcar_1126 | (PF04055) | ||||
| 338963.Pcar_0379 | (PF00025) | ||||
| 338963.Pcar_1514 | (PF10143) | ||||
| 338963.Pcar_2443 | (PF01592) | ||||
| 338963.Pcar_2841 | (PF03162) | ||||
| 338963.Pcar_2990 | (PF02823) | ||||
| 338963.Pcar_2993 | (PF00119) | ||||
| 338963.Pcar_2997 | (PF00231) | ||||
| 338963.Pcar_2998 | (PF02915) | ||||
| 338963.Pcar_0346 | (PF04055) | ||||
| 338963.Pcar_1189 | (PF02874) | ||||
| 338963.Pcar_2294 | PF11885 | ||||
| 338963.Pcar_2295 | (PF14691) | ||||
| 338963.Pcar_2274 | (PF02915) | ||||
| 338963.Pcar_2872 | (PF03063) | ||||
| 338963.Pcar_0913 | (PF01257) | ||||
| 338963.Pcar_0752 | (PF14691) | ||||
| 338963.Pcar_1404 | (PF04055) | ||||
| 338963.Pcar_1401 | (PF04055) | ||||
| 338963.Pcar_2600 | (PF14691) | ||||
| 338963.Pcar_2864 | (PF00075) | ||||
| 338963.Pcar_3021 | (PF03803) | ||||
| 338963.Pcar_0435 | (PF02915) | ||||
| 338963.Pcar_2387 | (PF13394) | ||||
| 338963.Pcar_0110 | (PF04055) | ||||
| 338963.Pcar_1396 | (PF04055) | ||||
| 338963.Pcar_0319 | (PF04055) | ||||
| 338963.Pcar_1897 | (PF04055) | ||||
| 338963.Pcar_1722 | (PF04055) | ||||
| 338963.Pcar_2230 | (PF00731) | ||||
| 338963.Pcar_2640 | (PF04055) | ||||
| 338963.Pcar_2732 | (PF04055) | ||||
| 338963.Pcar_2919 | (PF04055) | ||||
| 338963.Pcar_0479 | (PF04055) | ||||
| 338963.Pcar_1134 | (PF04055) | ||||
| 338963.Pcar_2035 | (PF12038) | ||||
| 338963.Pcar_2585 | (PF04055) | ||||
| 338963.Pcar_2107 | (PF04055) | ||||
| 338963.Pcar_2744 | (PF02915) | ||||
| 338963.Pcar_0888 | (PF03063) | ||||
| 338963.Pcar_0885 | (PF04055) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.75 (6/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.75 (6/8 KEGG proteins)
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