Metamenu

Effective results for Sodalis glossinidius str. morsitans (eggnog40)

Summary

Number of putative secreted proteins: 321
- Predicted by EffectiveT3: 97 (high confidence), 164 (low confidence)
- Predicted by EffectiveCCBD: 14 within, 8 before, 26 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 24 proteins (20 high, 4 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
343509.SG1617+(mitochondrial)
343509.SG1199PF00959ER
343509.SG1671PF00959ER
343509.SG1666+(mitochondrial)
343509.SG1387(>)PF00959(ER)
343509.SG1493+(mitochondrial); plastid
343509.SG2226(>)mitochondrial
343509.SG1644(>)PF00959(ER)
343509.SG1039PF00959ER
343509.SG0039+(mitochondrial); (plastid)
343509.SG2108(>)mitochondrial
343509.SG2105+(mitochondrial); plastid
343509.SG1246(>)(mitochondrial)
343509.SG1247(>)mitochondrial; (mitochondrial)
343509.SG0571+ER; (ER)
343509.SG0576++(plastid)
343509.SG0996+ER
343509.SG1681PF00959ER
343509.SG1824+mitochondrial; (mitochondrial)
343509.SG1915+mitochondrial; (mitochondrial)
343509.SG0160+ER
343509.SG1506(>)(ER)
343509.SG1559(>)PF00959(ER)
343509.SG0212(>)ER
343509.SG2208+(mitochondrial)
343509.SG1317(>)ER
343509.SG2360PF00959ER
343509.SG1437+ER
343509.SG0058+(plastid)
343509.SG0240+(mitochondrial)
343509.SG1066(+)(mitochondrial)
343509.SG0603(+)(mitochondrial)
343509.SG1498(+)(ER)
343509.SG1875+(mitochondrial)
343509.SG1390+(<)
343509.SG0024(+)mitochondrial
343509.SG0286+(plastid)
343509.SG0354+(mitochondrial)
343509.SG0728PF00959(ER)
343509.SG0618+PF02205
343509.SG1818+(<)
343509.SG1117(+)(mitochondrial)
343509.SG0575+(plastid)
343509.SG2059+(plastid)
343509.SG2055+(plastid)
343509.SG1231(+)ER
343509.SG0747PF00959(ER)
343509.SG1354(+)(mitochondrial)
343509.SG0775(+)mitochondrial
343509.SG0094PF00959(ER)
343509.SG1141+(mitochondrial)
343509.SG0549++
343509.SG0941+(plastid)
343509.SG1797(>)(plastid)
343509.SG0841(+)(ER)
343509.SG1099(+)mitochondrial
343509.SG2215(+)(mitochondrial)
343509.SG0044(+)(ER)
343509.SG1886(+)mitochondrial
343509.SG1189+plastid
343509.SG0696(+)(plastid)
343509.SG0056+
343509.SG0278+
343509.SG0900+
343509.SG1336+
343509.SG1605+
343509.SG0062+
343509.SG0649(>)
343509.SG0245+
343509.SG2349+
343509.SG0250+
343509.SG0495+
343509.SG2080(+)(PF07720)
343509.SG2394+
343509.SG1289+
343509.SG1284+
343509.SG1286+
343509.SG1287+
343509.SG0005+
343509.SG1060(>)
343509.SG0600(>)
343509.SG2359+
343509.SG1383(>)
343509.SG1386+
343509.SG1472+
343509.SG0387(+)(plastid)
343509.SG2260(+)(mitochondrial); not used
343509.SG2061+
343509.SG1396+
343509.SG1464+
343509.SG1737(<)
343509.SG0289(<)
343509.SG0731(PF04383)
343509.SG0737+
343509.SG0739+
343509.SG0516+
343509.SG2299(+)(>)
343509.SG0031(+)(plastid)
343509.SG1741(+)(mitochondrial)
343509.SG0724+
343509.SG0349+
343509.SG0617+
343509.SG1921(+)(mitochondrial)
343509.SG2104(>)
343509.SG2102+
343509.SG2043(<)
343509.SG1754PF14564
343509.SG0597+
343509.SG0573(PF07720)
343509.SG0574+
343509.SG1763+
343509.SG0370+
343509.SG0376(<)
343509.SG1938+
343509.SG0995+
343509.SG2051+
343509.SG0976+
343509.SG1341+
343509.SG1560PF07798
343509.SG1161PF00959
343509.SG1691PF07798
343509.SG0182+
343509.SG1905+
343509.SG0982+
343509.SG0986+
343509.SG0595(>)
343509.SG1220+
343509.SG1599+
343509.SG1351+
343509.SG1358(+)plastid
343509.SG1573(+)(>)
343509.SG1680+
343509.SG0175+
343509.SG1175+
343509.SG0315+
343509.SG0225+
343509.SG0553+
343509.SG0222+
343509.SG0423+
343509.SG1213PF00959
343509.SG1515+
343509.SG0763(+)plastid
343509.SG0764(>)
343509.SG1143PF07798
343509.SG0164+
343509.SG0162+
343509.SG1789(>)
343509.SG0439+
343509.SG0969+
343509.SG1969PF07798
343509.SG1962(>)
343509.SG0891+
343509.SG0896+
343509.SG1206(+)(>)
343509.SG1505(>)
343509.SG0151+
343509.SG0150+
343509.SG2413(<)
343509.SG0339+
343509.SG1798+
343509.SG1971(PF04383)
343509.SG2363+
343509.SG0939PF00959
343509.SG0848+
343509.SG1526+
343509.SG0148(>)
343509.SG1414+
343509.SG1945+
343509.SG2219+
343509.SG1313+
343509.SG0136+
343509.SG1402+
343509.SG1403+
343509.SG1401(>)
343509.SG1622+
343509.SG0040+
343509.SG1953+
343509.SG2368+
343509.SG0128(<)
343509.SG0866+
343509.SG0122+
343509.SG1434+
343509.SG0054(+)
343509.SG0583(+)
343509.SG1118(+)
343509.SG0876(+)
343509.SG0879(+)
343509.SG1195(+)
343509.SG1193(+)
343509.SG0117(+)
343509.SG1046(+)
343509.SG0641(+)
343509.SG0244(+)
343509.SG0488(+)
343509.SG1997(+)
343509.SG0805(+)
343509.SG1701(+)
343509.SG0498(+)
343509.SG1859(+)
343509.SG1648(+)
343509.SG1641(+)
343509.SG1440(+)
343509.SG1660(+)
343509.SG1661(+)
343509.SG0398(+)
343509.SG0006(+)
343509.SG1063(+)
343509.SG0625(+)
343509.SG0719(+)
343509.SG0534(+)
343509.SG2408(+)
343509.SG1849(+)
343509.SG0605(+)
343509.SG2253(+)
343509.SG2384(+)
343509.SG1473(+)
343509.SG0014(+)
343509.SG1017(+)
343509.SG1016(+)
343509.SG1723(+)
343509.SG1652(+)
343509.SG0522(+)
343509.SG1872(+)not used
343509.SG1874(+)
343509.SG1391(+)
343509.SG1395(+)
343509.SG2289(+)
343509.SG1005(+)
343509.SG1693(+)
343509.SG2272(+)
343509.SG2077(+)
343509.SG2078(+)
343509.SG1252(+)
343509.SG0290(+)
343509.SG0506(+)
343509.SG0500(+)
343509.SG1816(+)
343509.SG2101(+)
343509.SG2041(+)
343509.SG2045(+)
343509.SG2044(+)
343509.SG0757(+)
343509.SG0197(+)
343509.SG1809(+)
343509.SG1838(+)
343509.SG1939(+)
343509.SG0991(+)
343509.SG2136(+)
343509.SG1233(+)
343509.SG1232(+)
343509.SG1234(+)
343509.SG1037(+)
343509.SG1583(+)
343509.SG1346(+)
343509.SG0821(+)
343509.SG1348(+)
343509.SG1568(+)
343509.SG2317+
343509.SG0562(+)
343509.SG0564(+)
343509.SG1767(+)
343509.SG1761(+)
343509.SG1909(+)
343509.SG0988(+)
343509.SG2025(+)
343509.SG2027(+)
343509.SG1222(+)
343509.SG1223(+)
343509.SG1356(+)
343509.SG0081(+)
343509.SG1575(+)
343509.SG1684(+)
343509.SG1171(+)
343509.SG0178(+)
343509.SG0317(+)
343509.SG0424(+)
343509.SG0590(+)
343509.SG1911(+)
343509.SG1698(+)
343509.SG2151(+)
343509.SG2153(+)
343509.SG0762(+)
343509.SG0168(+)
343509.SG0781(+)
343509.SG2146(+)
343509.SG0892(+)
343509.SG2000(+)
343509.SG0702(+)
343509.SG0700(+)
343509.SG1655(+)
343509.SG1376(+)
343509.SG1550(+)
343509.SG2412(+)
343509.SG0336(+)
343509.SG0332(+)
343509.SG1790(+)
343509.SG0203(+)
343509.SG2174(+)
343509.SG2365(+)
343509.SG1300(+)
343509.SG1631(+)
343509.SG0459(+)
343509.SG0215(+)
343509.SG1946(+)
343509.SG1038(+)
343509.SG2162(+)
343509.SG2165(+)
343509.SG2379(+)
343509.SG0922(+)
343509.SG2205(+)
343509.SG1085(+)
343509.SG1625(+)
343509.SG0665(+)
343509.SG0664(+)
343509.SG0263(+)
343509.SG0460(+)
343509.SG0918(+)
343509.SG0910(+)
343509.SG0557(+)
343509.SG0869(+)
343509.SG1181(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 2.8 (28/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================