Effective results for Psychrobacter sp. PRwf-1 (eggnog40)

Summary

Number of putative secreted proteins: 57
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 57 proteins (1 high, 56 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
349106.PsycPRwf_0234				(PF13276) (PF00665)	mitochondrial
349106.PsycPRwf_1165				(PF13276) (PF00665)	(mitochondrial)
349106.PsycPRwf_1230				(PF13276) (PF00665)	(mitochondrial)
349106.PsycPRwf_1495				(PF13276) (PF00665)	(mitochondrial)
349106.PsycPRwf_1362				(PF13276) (PF00665)	(mitochondrial)
349106.PsycPRwf_1496				(PF01527)	(mitochondrial)
349106.PsycPRwf_1091				(PF13276) (PF00665)	(mitochondrial)
349106.PsycPRwf_2292				(PF17048)	mitochondrial; plastid
349106.PsycPRwf_1055				(PF13276) (PF00665)	(mitochondrial)
349106.PsycPRwf_1478				(PF13276) (PF00665)	(mitochondrial)
349106.PsycPRwf_1166				(PF01527)	(mitochondrial)
349106.PsycPRwf_1229				(PF01527)	(mitochondrial)
349106.PsycPRwf_1352				(PF00665)	(mitochondrial)
349106.PsycPRwf_1364				(PF01527)
349106.PsycPRwf_0985				PF03414
349106.PsycPRwf_0984				(PF05704)
349106.PsycPRwf_1119				(PF01527)
349106.PsycPRwf_1118				(PF13276)
349106.PsycPRwf_1117				(PF01527)
349106.PsycPRwf_1120				(PF00665)
349106.PsycPRwf_0235				(PF01527)
349106.PsycPRwf_1358				(PF00665)
349106.PsycPRwf_1355				(PF01527)
349106.PsycPRwf_1357				(PF01527)
349106.PsycPRwf_1356				(PF00665)
349106.PsycPRwf_0240				(PF01527)
349106.PsycPRwf_0700				(PF03400)
349106.PsycPRwf_1938				(PF03400)
349106.PsycPRwf_0265				(PF03400)
349106.PsycPRwf_1090				(PF01527)
349106.PsycPRwf_1052				(PF01527)
349106.PsycPRwf_1053				(PF00665)
349106.PsycPRwf_1057				(PF01527)
349106.PsycPRwf_1504				(PF00665)
349106.PsycPRwf_1505				(PF01527)
349106.PsycPRwf_1470				(PF13276)
349106.PsycPRwf_1471				(PF00665)
349106.PsycPRwf_1472				(PF00665)
349106.PsycPRwf_1473				(PF01527)
349106.PsycPRwf_1476				(PF00665)
349106.PsycPRwf_1477				(PF01527)
349106.PsycPRwf_0058				(PF14328)
349106.PsycPRwf_0730				(PF01527)
349106.PsycPRwf_0731				(PF00665)
349106.PsycPRwf_1469				(PF01527)
349106.PsycPRwf_1525				(PF03400)
349106.PsycPRwf_1028				(PF00665)
349106.PsycPRwf_1027				(PF01527)
349106.PsycPRwf_1025				(PF01527)
349106.PsycPRwf_1024				(PF00665)
349106.PsycPRwf_1492				(PF00665)
349106.PsycPRwf_1493				(PF01527)
349106.PsycPRwf_1944				(PF00665)
349106.PsycPRwf_1943				(PF01527)
349106.PsycPRwf_1315				(PF00665)
349106.PsycPRwf_1314				(PF01527)
349106.PsycPRwf_1480				(PF01527)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================