Effective results for Burkholderia dolosa AU0158 (eggnog40)

Summary

Number of putative secreted proteins: 696
- Predicted by EffectiveT3: 212 (high confidence), 312 (low confidence)
- Predicted by EffectiveCCBD: 23 within, 4 before, 33 behind expected region 25..70aa
- Predicted by T4SEpre: 74
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 61 proteins (2 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
350701.BDAG_00829		+			(ER)
350701.BDAG_04377			+	(PF00771)	ER; (ER)
350701.BDAG_01755			+	(PF08479)	ER
350701.BDAG_01158	+				(mitochondrial)
350701.BDAG_03296	+				(mitochondrial)
350701.BDAG_04800		+			ER
350701.BDAG_02576		+			ER
350701.BDAG_02973			+		ER
350701.BDAG_02991				(PF00771)	ER
350701.BDAG_00825	+				(mitochondrial); (plastid)
350701.BDAG_02999			+		mitochondrial
350701.BDAG_00226			+		mitochondrial
350701.BDAG_04905	+				(mitochondrial)
350701.BDAG_03803	+				(mitochondrial); plastid
350701.BDAG_04698				(PF08479)	ER
350701.BDAG_02506		(>)			(mitochondrial)
350701.BDAG_02508			+		ER
350701.BDAG_01896				(PF08479)	ER
350701.BDAG_01897				(PF13332)	(mitochondrial)
350701.BDAG_03322	+				(mitochondrial); (plastid)
350701.BDAG_00695	+				(mitochondrial); (plastid)
350701.BDAG_04911			+		mitochondrial
350701.BDAG_04597				(PF08479)	ER
350701.BDAG_03813			+		ER
350701.BDAG_04687	+				(mitochondrial); plastid
350701.BDAG_01075		(<)			ER
350701.BDAG_03484			+		ER
350701.BDAG_03306				(PF08479)	mitochondrial; (mitochondrial)
350701.BDAG_00474		+		(PF10142)	(mitochondrial)
350701.BDAG_03274	+				ER; (ER)
350701.BDAG_03785		+			(ER)
350701.BDAG_00656		(>)			ER
350701.BDAG_04693				(PF08479)	mitochondrial; (mitochondrial)
350701.BDAG_01850		+			ER
350701.BDAG_01912		(>)			(mitochondrial)
350701.BDAG_04897	+				mitochondrial; plastid
350701.BDAG_00315	+				(mitochondrial)
350701.BDAG_04097			+		(mitochondrial)
350701.BDAG_03472			+		ER
350701.BDAG_03073			+		(mitochondrial)
350701.BDAG_04366	+				(mitochondrial); plastid
350701.BDAG_04086	+				mitochondrial; plastid
350701.BDAG_03196				(PF14716) (PF14792) (PF14791)
350701.BDAG_03534	+				(mitochondrial); (plastid)
350701.BDAG_03538		+			(mitochondrial)
350701.BDAG_04180	+				(mitochondrial)
350701.BDAG_02297	+				mitochondrial
350701.BDAG_02125		(>)			ER
350701.BDAG_03459	+				mitochondrial
350701.BDAG_00433			+		(mitochondrial)
350701.BDAG_00638		+			mitochondrial; ER
350701.BDAG_02861		(>)			mitochondrial
350701.BDAG_04294			+		ER
350701.BDAG_01001		+			(mitochondrial)
350701.BDAG_01485			+		ER
350701.BDAG_02858			+		ER
350701.BDAG_04063		(>)			ER
350701.BDAG_01383		(>)			ER
350701.BDAG_01386		(>)			(mitochondrial)
350701.BDAG_01908		+			(mitochondrial)
350701.BDAG_00536			+		(ER)
350701.BDAG_01027		(>)			ER
350701.BDAG_00392	+				(mitochondrial); (plastid)
350701.BDAG_00393	+				(mitochondrial); (plastid)
350701.BDAG_02387			+		ER
350701.BDAG_00324	+				(ER)
350701.BDAG_03706				(PF00872)	(mitochondrial)
350701.BDAG_04863		+			ER
350701.BDAG_04266				(PF08479)	ER
350701.BDAG_01526	+				mitochondrial
350701.BDAG_01035		+			(mitochondrial)
350701.BDAG_00479			+		ER
350701.BDAG_02081			+		mitochondrial
350701.BDAG_01992		(>)			ER
350701.BDAG_00735			+		ER
350701.BDAG_00025			+		(mitochondrial)
350701.BDAG_02961	+				(plastid)
350701.BDAG_02746	+		+
350701.BDAG_01763	+				plastid
350701.BDAG_00238	(+)				ER
350701.BDAG_00057				(PF00771)	(mitochondrial)
350701.BDAG_02400	(+)				mitochondrial
350701.BDAG_02571		(>)			(mitochondrial)
350701.BDAG_02575	+				(ER)
350701.BDAG_02970	+				(plastid)
350701.BDAG_00139		(<)	+
350701.BDAG_02534	+				(plastid)
350701.BDAG_03104	(+)				(ER)
350701.BDAG_01272	+				(plastid)
350701.BDAG_03818	+				(plastid)
350701.BDAG_03004				(PF08479)	(ER)
350701.BDAG_03003	+			(PF13332)
350701.BDAG_01939	+				(plastid)
350701.BDAG_00683	(+)				(ER); (mitochondrial)
350701.BDAG_01798	(+)				mitochondrial
350701.BDAG_04142		(>)			(ER)
350701.BDAG_04548	+				plastid
350701.BDAG_02011	(+)				(mitochondrial)
350701.BDAG_04992	(+)				mitochondrial; (mitochondrial)
350701.BDAG_01118	(+)				(ER)
350701.BDAG_04371				(PF00771)	(ER)
350701.BDAG_04376	+				(plastid)
350701.BDAG_04557	(+)				(ER)
350701.BDAG_04122	+				(plastid)
350701.BDAG_04647	+				plastid
350701.BDAG_03200				(PF14716) (PF14791)
350701.BDAG_04949	(+)				mitochondrial; (mitochondrial)
350701.BDAG_00084	+				(plastid)
350701.BDAG_00793	+				(mitochondrial)
350701.BDAG_02276	+				(mitochondrial)
350701.BDAG_00904	+				(ER)
350701.BDAG_00823			+		(ER)
350701.BDAG_04880	+			(PF12588)
350701.BDAG_04538	+				(plastid)
350701.BDAG_02305	(+)				(mitochondrial)
350701.BDAG_01804	(+)				(ER)
350701.BDAG_04646	(+)				ER
350701.BDAG_00967	+				plastid
350701.BDAG_00185		(>)			(mitochondrial)
350701.BDAG_00763	(+)				ER
350701.BDAG_00298	(+)				(mitochondrial)
350701.BDAG_04199	+				(plastid)
350701.BDAG_04062	+				(plastid)
350701.BDAG_03331	+				plastid
350701.BDAG_00774	+				(mitochondrial)
350701.BDAG_00284	(+)				(ER)
350701.BDAG_01005	(+)				(mitochondrial); plastid
350701.BDAG_02459	+				(plastid)
350701.BDAG_04284	(+)				(mitochondrial); plastid
350701.BDAG_00532	+				(mitochondrial)
350701.BDAG_02302			+		(mitochondrial)
350701.BDAG_03713	(+)				(ER)
350701.BDAG_03374	+	+
350701.BDAG_01711		(>)			(mitochondrial)
350701.BDAG_03974	(+)				(mitochondrial)
350701.BDAG_04655	(+)				(mitochondrial); (plastid)
350701.BDAG_04725	+	(>)
350701.BDAG_02365	(+)				(ER)
350701.BDAG_01739	+		+
350701.BDAG_03140	+				(mitochondrial)
350701.BDAG_00541	+				(mitochondrial)
350701.BDAG_01121	(+)				(ER); (plastid)
350701.BDAG_04480	(+)				mitochondrial; plastid
350701.BDAG_02598	(+)				(ER)
350701.BDAG_02776	(+)				mitochondrial; (mitochondrial)
350701.BDAG_02085			+		(plastid)
350701.BDAG_00731	+				plastid
350701.BDAG_02562	+
350701.BDAG_02561	+
350701.BDAG_02960	(+)				(mitochondrial)
350701.BDAG_02964	+
350701.BDAG_04740				(PF06884)
350701.BDAG_02980	+
350701.BDAG_02983	+
350701.BDAG_02986	+
350701.BDAG_02741	+
350701.BDAG_00830	+
350701.BDAG_02189	+
350701.BDAG_02180			+
350701.BDAG_01983	+
350701.BDAG_03960	+
350701.BDAG_01871		+
350701.BDAG_01626	+
350701.BDAG_04805	(+)				plastid
350701.BDAG_00235	+
350701.BDAG_00588	+
350701.BDAG_01509			+
350701.BDAG_01477	+
350701.BDAG_02408	+
350701.BDAG_01024				(PF13565)
350701.BDAG_04158			+
350701.BDAG_04159			+
350701.BDAG_02197	+
350701.BDAG_02354	+
350701.BDAG_03113	+
350701.BDAG_03623	+
350701.BDAG_03332				(PF02010)
350701.BDAG_03934	+
350701.BDAG_00220	+
350701.BDAG_04904	+
350701.BDAG_01066		(>)
350701.BDAG_04584	+
350701.BDAG_01666				(PF00847)
350701.BDAG_04347	(+)				(plastid)
350701.BDAG_00900	+
350701.BDAG_04699				(PF13332)
350701.BDAG_04696				(PF00872)
350701.BDAG_04163	+
350701.BDAG_01313				(PF01989)
350701.BDAG_04768				(PF13964)
350701.BDAG_02501				(PF10908)
350701.BDAG_02503	(+)				(mitochondrial)
350701.BDAG_01088	+
350701.BDAG_02219	+
350701.BDAG_02699		(>)
350701.BDAG_00369	+
350701.BDAG_00368	(+)		+
350701.BDAG_03109				(PF00872)
350701.BDAG_03395			+
350701.BDAG_03925	+
350701.BDAG_00217				(PF00872)
350701.BDAG_00216				(PF00872)
350701.BDAG_04226		(>)
350701.BDAG_04222			+
350701.BDAG_04917	+
350701.BDAG_04919	+
350701.BDAG_04357	+
350701.BDAG_01274			+
350701.BDAG_04176	+
350701.BDAG_00288			+
350701.BDAG_02095	+
350701.BDAG_01308				(PF00872)
350701.BDAG_01092	+
350701.BDAG_03041	+
350701.BDAG_02684	+
350701.BDAG_02683	+
350701.BDAG_00009	+
350701.BDAG_02688				(PF07929)
350701.BDAG_01269		(>)
350701.BDAG_04046	+
350701.BDAG_03002				(PF00872)
350701.BDAG_03994	+
350701.BDAG_03133	(+)			(PF14716)
350701.BDAG_03488			+
350701.BDAG_03649				(PF00771)
350701.BDAG_00111				(PF10908)
350701.BDAG_01930	+
350701.BDAG_00128	+
350701.BDAG_00243			+
350701.BDAG_00207	+
350701.BDAG_04214	+
350701.BDAG_04849	(+)				plastid
350701.BDAG_00680	+
350701.BDAG_04964	+
350701.BDAG_04966				(PF16155)
350701.BDAG_01244	(+)				(mitochondrial)
350701.BDAG_01306				(PF07929)
350701.BDAG_01646	+
350701.BDAG_04785	(+)				(mitochondrial)
350701.BDAG_02528	+
350701.BDAG_02522	+
350701.BDAG_00871	+
350701.BDAG_03539	+
350701.BDAG_01209	(+)				(plastid)
350701.BDAG_00334			+
350701.BDAG_02300	+
350701.BDAG_04577	+
350701.BDAG_00399			+
350701.BDAG_00895				(PF00872)
350701.BDAG_02012	+
350701.BDAG_03652	+
350701.BDAG_00275	+
350701.BDAG_04201			+
350701.BDAG_04974	+
350701.BDAG_01787			+
350701.BDAG_01784	(+)				plastid
350701.BDAG_04374			+
350701.BDAG_00095	+
350701.BDAG_01659	+
350701.BDAG_00489	+
350701.BDAG_04645	+
350701.BDAG_02386	+
350701.BDAG_04794				(PF13565)
350701.BDAG_02222	(+)				(mitochondrial)
350701.BDAG_02225	+
350701.BDAG_02883	+
350701.BDAG_01921	+
350701.BDAG_01206	+
350701.BDAG_01851	+
350701.BDAG_04115	+
350701.BDAG_03365			+
350701.BDAG_04941			+
350701.BDAG_04946	+
350701.BDAG_00317	+
350701.BDAG_00085	+
350701.BDAG_00794	(+)				(ER)
350701.BDAG_04791		(>)
350701.BDAG_01351	+
350701.BDAG_01352	+
350701.BDAG_02492	+
350701.BDAG_02494	+
350701.BDAG_02253			+
350701.BDAG_02672		(>)
350701.BDAG_02990	(+)				(mitochondrial)
350701.BDAG_02074				(PF07929)
350701.BDAG_02070				(PF00872)
350701.BDAG_02102	+
350701.BDAG_04611		(>)
350701.BDAG_03474	(+)				(mitochondrial)
350701.BDAG_00218				(PF00872)
350701.BDAG_00524	+
350701.BDAG_02994	+
350701.BDAG_00413	+
350701.BDAG_00320				(PF13565)
350701.BDAG_01236	(+)				(mitochondrial)
350701.BDAG_01235	(+)				(mitochondrial)
350701.BDAG_00034	+
350701.BDAG_04415	+
350701.BDAG_02489	+
350701.BDAG_03924	+
350701.BDAG_04628	(+)	+
350701.BDAG_02066				(PF00872)
350701.BDAG_02065				(PF00872)
350701.BDAG_04394	+
350701.BDAG_02116	+
350701.BDAG_02119				(PF00872)
350701.BDAG_03194	+
350701.BDAG_01208			+
350701.BDAG_00336			+
350701.BDAG_04432				(PF01989)
350701.BDAG_01593		(>)
350701.BDAG_01376	+
350701.BDAG_02871	+
350701.BDAG_04616	+
350701.BDAG_01113	+
350701.BDAG_04367	+
350701.BDAG_01012			+
350701.BDAG_04448		(>)
350701.BDAG_04998	+
350701.BDAG_00342			+
350701.BDAG_01103		+
350701.BDAG_01581	+
350701.BDAG_00290				PF11397
350701.BDAG_02460	+
350701.BDAG_04346	(+)				(plastid)
350701.BDAG_04656		(>)
350701.BDAG_02047	+
350701.BDAG_01218		+
350701.BDAG_04148	(+)				(ER)
350701.BDAG_02281	+
350701.BDAG_02288	+
350701.BDAG_01496	+
350701.BDAG_03620	(+)				(plastid)
350701.BDAG_00970	+
350701.BDAG_02133	+
350701.BDAG_02174	+
350701.BDAG_03428	+
350701.BDAG_02173	(+)				plastid
350701.BDAG_00086	+
350701.BDAG_03085			+
350701.BDAG_01822	+
350701.BDAG_03559				PF11397
350701.BDAG_00609	+
350701.BDAG_04853	+
350701.BDAG_04852	+
350701.BDAG_00771		+
350701.BDAG_03952			+
350701.BDAG_01554				(PF00872)
350701.BDAG_01398	+
350701.BDAG_02835	+
350701.BDAG_00099	+
350701.BDAG_03035	+
350701.BDAG_02924	+
350701.BDAG_03065	+
350701.BDAG_04703	+
350701.BDAG_02705		+
350701.BDAG_01636		(>)
350701.BDAG_00945			+
350701.BDAG_00943	+
350701.BDAG_00198	+
350701.BDAG_03896	+
350701.BDAG_03897			+
350701.BDAG_00367			+
350701.BDAG_00366	+
350701.BDAG_04023		(>)
350701.BDAG_00706				(PF13565)
350701.BDAG_00702	+
350701.BDAG_04446	+
350701.BDAG_04449			+
350701.BDAG_03948	(+)				(ER)
350701.BDAG_05002		(<)
350701.BDAG_01385	(+)				(plastid)
350701.BDAG_01497	+
350701.BDAG_01493	+
350701.BDAG_01490	+
350701.BDAG_01498	+
350701.BDAG_00388	+
350701.BDAG_02445	+
350701.BDAG_02621	+
350701.BDAG_02622	+
350701.BDAG_04047			+
350701.BDAG_03608	+
350701.BDAG_03152		(>)
350701.BDAG_00488	+
350701.BDAG_03717			+
350701.BDAG_00177		+
350701.BDAG_00375	+
350701.BDAG_00527	+
350701.BDAG_00719	+
350701.BDAG_01538	+
350701.BDAG_05014				(PF07929)
350701.BDAG_04388	+
350701.BDAG_04387				(PF07720)
350701.BDAG_02439	+
350701.BDAG_04494	+
350701.BDAG_04953	(+)				(plastid)
350701.BDAG_02891			+
350701.BDAG_00525		(>)
350701.BDAG_02091		(>)
350701.BDAG_01976		(>)
350701.BDAG_01731	(+)				(mitochondrial)
350701.BDAG_03707				(PF00872)
350701.BDAG_03382	+
350701.BDAG_03156	+
350701.BDAG_03360	+
350701.BDAG_03568	+
350701.BDAG_04862				(PF13565)
350701.BDAG_01743	+
350701.BDAG_01143	+
350701.BDAG_01120			+
350701.BDAG_00044		+
350701.BDAG_01039	+
350701.BDAG_04398	+
350701.BDAG_04390				(PF13565)
350701.BDAG_04391				(PF13964)
350701.BDAG_04132	+
350701.BDAG_01459			+
350701.BDAG_00973	(+)				plastid
350701.BDAG_02425	(+)				(plastid)
350701.BDAG_04486		+
350701.BDAG_02557	+
350701.BDAG_02395	+
350701.BDAG_02955	(+)				(plastid)
350701.BDAG_04997	(+)				(ER)
350701.BDAG_00470			+
350701.BDAG_00804	+
350701.BDAG_03251	(+)				(plastid)
350701.BDAG_01927	+
350701.BDAG_02374	+
350701.BDAG_03930	(+)				(plastid)
350701.BDAG_00715		(>)
350701.BDAG_04005	(+)				(mitochondrial)
350701.BDAG_03354		(>)
350701.BDAG_00059				(PF13565)
350701.BDAG_00150			+
350701.BDAG_04819	(+)				(mitochondrial)
350701.BDAG_00732	(+)				(plastid)
350701.BDAG_01522	+
350701.BDAG_04921	+
350701.BDAG_04923		+
350701.BDAG_03914				(PF00872)
350701.BDAG_03916	(+)				(ER)
350701.BDAG_03911	(+)				(mitochondrial)
350701.BDAG_03913	+
350701.BDAG_03825	+
350701.BDAG_03225	(+)				(mitochondrial)
350701.BDAG_00901	+
350701.BDAG_01192			+
350701.BDAG_04747	(+)
350701.BDAG_04746	(+)
350701.BDAG_02989	(+)
350701.BDAG_02345	(+)
350701.BDAG_01252	(+)
350701.BDAG_01870	(+)
350701.BDAG_01873	(+)
350701.BDAG_03347	(+)
350701.BDAG_00120	(+)
350701.BDAG_00582	(+)
350701.BDAG_03904	(+)
350701.BDAG_01610	(+)
350701.BDAG_01479	(+)
350701.BDAG_04110	(+)
350701.BDAG_04114	(+)
350701.BDAG_01476	(+)
350701.BDAG_01955	(+)
350701.BDAG_00450	(+)
350701.BDAG_02930	(+)
350701.BDAG_01542	+
350701.BDAG_04812	(+)
350701.BDAG_04900	(+)
350701.BDAG_01260	(+)
350701.BDAG_02530	(+)
350701.BDAG_02533	(+)
350701.BDAG_04692	(+)
350701.BDAG_03790	(+)
350701.BDAG_00852	(+)
350701.BDAG_02697	(+)
350701.BDAG_02322	(+)
350701.BDAG_04330	(+)
350701.BDAG_02033	(+)
350701.BDAG_04331	(+)
350701.BDAG_03038	(+)
350701.BDAG_03106	(+)
350701.BDAG_03102	(+)
350701.BDAG_01899	(+)
350701.BDAG_03631	(+)
350701.BDAG_03635	(+)
350701.BDAG_00102	(+)
350701.BDAG_00452	(+)
350701.BDAG_04019	(+)
350701.BDAG_04827	(+)
350701.BDAG_00692	(+)
350701.BDAG_00697	(+)
350701.BDAG_00074	(+)
350701.BDAG_01678	(+)
350701.BDAG_02642	(+)
350701.BDAG_04172	(+)
350701.BDAG_03545	(+)
350701.BDAG_01090	(+)
350701.BDAG_03245	(+)
350701.BDAG_01552	(+)
350701.BDAG_01795	(+)
350701.BDAG_01738	(+)
350701.BDAG_00590	(+)
350701.BDAG_02026	(+)
350701.BDAG_01936	(+)
350701.BDAG_03586	(+)
350701.BDAG_03899	(+)
350701.BDAG_00684	(+)
350701.BDAG_00661	(+)
350701.BDAG_01472	(+)
350701.BDAG_01643	(+)
350701.BDAG_01555	(+)
350701.BDAG_01334	(+)
350701.BDAG_04547	(+)
350701.BDAG_02786	(+)
350701.BDAG_00236	(+)
350701.BDAG_01758	(+)
350701.BDAG_02658	(+)
350701.BDAG_04327	(+)
350701.BDAG_04570	(+)
350701.BDAG_04576	(+)
350701.BDAG_03272	(+)
350701.BDAG_03277	(+)
350701.BDAG_04207	(+)
350701.BDAG_04970	(+)
350701.BDAG_01780	(+)
350701.BDAG_01258	(+)
350701.BDAG_00092	(+)
350701.BDAG_00784	(+)
350701.BDAG_01650	(+)
350701.BDAG_03870	(+)
350701.BDAG_01320	(+)
350701.BDAG_02221	(+)
350701.BDAG_02882	(+)
350701.BDAG_02312	(+)
350701.BDAG_03060	(+)
350701.BDAG_02794	(+)
350701.BDAG_02008	(+)
350701.BDAG_02417	(+)
350701.BDAG_01918	(+)
350701.BDAG_00266	(+)
350701.BDAG_00464	(+)
350701.BDAG_00080	(+)
350701.BDAG_01680	(+)
350701.BDAG_04091	(+)
350701.BDAG_01350	(+)
350701.BDAG_02254	(+)
350701.BDAG_00941	(+)
350701.BDAG_02673	(+)
350701.BDAG_02671	(+)
350701.BDAG_02105	(+)
350701.BDAG_04462	(+)
350701.BDAG_03670	(+)
350701.BDAG_03671	(+)
350701.BDAG_03077	(+)
350701.BDAG_03071	(+)
350701.BDAG_01905	(+)
350701.BDAG_02993	(+)
350701.BDAG_00411	(+)
350701.BDAG_04954	(+)
350701.BDAG_03965	(+)
350701.BDAG_03928	(+)
350701.BDAG_01138	(+)
350701.BDAG_04400	(+)
350701.BDAG_04084	(+)
350701.BDAG_04083	(+)
350701.BDAG_04007	(+)
350701.BDAG_02080	(+)
350701.BDAG_04535	(+)
350701.BDAG_02484	(+)
350701.BDAG_02481	(+)
350701.BDAG_02243	(+)
350701.BDAG_01797	(+)
350701.BDAG_03314	(+)
350701.BDAG_02111	(+)
350701.BDAG_03198	(+)
350701.BDAG_01451	(+)
350701.BDAG_01809	(+)
350701.BDAG_03536	(+)
350701.BDAG_03535	(+)
350701.BDAG_00337	(+)
350701.BDAG_03929	(+)
350701.BDAG_03540	(+)
350701.BDAG_02478	(+)
350701.BDAG_02613	(+)
350701.BDAG_02612	(+)
350701.BDAG_02058	(+)
350701.BDAG_03182	(+)
350701.BDAG_03451	(+)
350701.BDAG_03054	(+)
350701.BDAG_04337	(+)
350701.BDAG_04473	(+)
350701.BDAG_03753	(+)
350701.BDAG_01586	(+)
350701.BDAG_01582	(+)
350701.BDAG_00297	(+)
350701.BDAG_00296	(+)
350701.BDAG_00299	(+)
350701.BDAG_01369	(+)
350701.BDAG_03057	(+)
350701.BDAG_02464	(+)
350701.BDAG_02918	(+)
350701.BDAG_02868	(+)
350701.BDAG_01423	(+)
350701.BDAG_00338	(+)
350701.BDAG_01427	(+)
350701.BDAG_02289	(+)
350701.BDAG_00748	(+)
350701.BDAG_03236	(+)
350701.BDAG_02175	(+)
350701.BDAG_01951	(+)
350701.BDAG_01489	(+)
350701.BDAG_01488	(+)
350701.BDAG_02854	(+)
350701.BDAG_04671	(+)
350701.BDAG_00280	(+)
350701.BDAG_00947	(+)
350701.BDAG_00949	(+)
350701.BDAG_03434	(+)
350701.BDAG_03063	(+)
350701.BDAG_01845	(+)
350701.BDAG_01831	(+)
350701.BDAG_00164	(+)
350701.BDAG_00362	(+)
350701.BDAG_01990	(+)
350701.BDAG_01764	(+)
350701.BDAG_01765	(+)
350701.BDAG_02847	(+)
350701.BDAG_02840	(+)
350701.BDAG_00180	(+)
350701.BDAG_01805	(+)
350701.BDAG_02716	(+)
350701.BDAG_01603	(+)
350701.BDAG_03159	(+)
350701.BDAG_02168	(+)
350701.BDAG_00990	(+)
350701.BDAG_03716	(+)
350701.BDAG_03397	(+)
350701.BDAG_00176	(+)
350701.BDAG_00572	(+)
350701.BDAG_04274	(+)
350701.BDAG_01157	(+)
350701.BDAG_00445	(+)
350701.BDAG_03229	(+)
350701.BDAG_04815	(+)
350701.BDAG_04383	(+)
350701.BDAG_02912	(+)
350701.BDAG_03852	(+)
350701.BDAG_01527	(+)
350701.BDAG_00639	(+)
350701.BDAG_00924	(+)
350701.BDAG_02363	(+)
350701.BDAG_02831	(+)
350701.BDAG_04993	(+)
350701.BDAG_04605	(+)
350701.BDAG_01859	(+)
350701.BDAG_03383	(+)
350701.BDAG_03363	(+)
350701.BDAG_00144	(+)
350701.BDAG_00490	(+)
350701.BDAG_01690	(+)
350701.BDAG_04301	(+)
350701.BDAG_00740	(+)
350701.BDAG_04264	(+)
350701.BDAG_01706	(+)
350701.BDAG_03968	(+)
350701.BDAG_00032	(+)
350701.BDAG_00045	(+)
350701.BDAG_01458	(+)
350701.BDAG_02888	(+)
350701.BDAG_02956	(+)
350701.BDAG_01432	(+)
350701.BDAG_04733	(+)
350701.BDAG_04736	(+)
350701.BDAG_02082	(+)
350701.BDAG_01692	(+)
350701.BDAG_00473	(+)
350701.BDAG_00716	(+)
350701.BDAG_01846	(+)
350701.BDAG_02655	(+)
350701.BDAG_01840	(+)
350701.BDAG_03176	(+)
350701.BDAG_03227	(+)
350701.BDAG_03171	(+)
350701.BDAG_01996	(+)
350701.BDAG_00634	(+)
350701.BDAG_00552	(+)
350701.BDAG_03379	(+)
350701.BDAG_03910	(+)
350701.BDAG_01719	(+)
350701.BDAG_04036	(+)
350701.BDAG_01514	(+)
350701.BDAG_01049	(+)
350701.BDAG_03330	(+)
350701.BDAG_01462	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 2.9 (29/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.375 (19/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================