Metamenu

Effective results for Leptospira borgpetersenii serovar Hardjo-bovis str. L550 (eggnog40)

Summary

Number of putative secreted proteins: 195
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 52 eukaryotic-like domains, contained in 195 proteins (113 high, 82 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
355276.LBL_0416(PF03947) (PF00181)(mitochondrial)
355276.LBL_0465PF00673 PF00281(mitochondrial)
355276.LBL_0456(PF03947) (PF00181)(mitochondrial)
355276.LBL_0440(PF01000) (PF01193)(mitochondrial)
355276.LBL_0480(PF01000) (PF01193)(mitochondrial)
355276.LBL_0425PF00673 PF00281(mitochondrial)
355276.LBL_0424(PF17136)mitochondrial; (mitochondrial)
355276.LBL_0917(PF04519)(mitochondrial)
355276.LBL_1398(PF03062)ER
355276.LBL_2448(PF01609)ER
355276.LBL_0439(PF00163)(mitochondrial)
355276.LBL_1944(PF01609)ER
355276.LBL_4165(PF03062)ER
355276.LBL_4163(PF03062)ER
355276.LBL_1119(PF01609)ER
355276.LBL_0429PF00861(mitochondrial)
355276.LBL_2738(PF02348)mitochondrial
355276.LBL_1713(PF03062)ER
355276.LBL_1477(PF01609)ER
355276.LBL_0418(PF00237)mitochondrial
355276.LBL_1108(PF01609)ER
355276.LBL_1448PF01375ER
355276.LBL_2933(PF01609)ER
355276.LBL_1621(PF03062)ER
355276.LBL_0875(PF01609)ER
355276.LBL_0479(PF00163)(mitochondrial)
355276.LBL_0473(PF00344)(mitochondrial)
355276.LBL_2160(PF03062)ER
355276.LBL_0469PF00861(mitochondrial)
355276.LBL_0460PF00252(mitochondrial)
355276.LBL_0464(PF17136)mitochondrial; (mitochondrial)
355276.LBL_0210(PF01609)ER
355276.LBL_0859(PF01609)ER
355276.LBL_0458(PF00237)mitochondrial
355276.LBL_2369PF10520(ER)
355276.LBL_2547(PF02348)(mitochondrial)
355276.LBL_1793(PF01609)ER
355276.LBL_0433(PF00344)(mitochondrial)
355276.LBL_2158PF01375ER
355276.LBL_4036(PF01609)ER
355276.LBL_0542(PF01609)ER
355276.LBL_1549(PF03062)ER
355276.LBL_1302(PF01609)ER
355276.LBL_1169(PF02348)(mitochondrial); plastid
355276.LBL_1162PF06739ER
355276.LBL_1163PF06739ER
355276.LBL_2418PF06739ER
355276.LBL_2526(PF01609)ER
355276.LBL_0176PF16073(mitochondrial)
355276.LBL_2530(PF01609)ER
355276.LBL_0420PF00252(mitochondrial)
355276.LBL_0766(PF15071)ER
355276.LBL_0583PF06739ER
355276.LBL_1187(PF03102)(ER)
355276.LBL_1183(PF02348)(mitochondrial)
355276.LBL_1966(PF03062)ER
355276.LBL_4272(PF03062)ER
355276.LBL_0906(PF03062)ER
355276.LBL_0430PF03719 PF00333
355276.LBL_0417(PF00203)(mitochondrial)
355276.LBL_0419PF00189(mitochondrial)
355276.LBL_0408PF02371(mitochondrial)
355276.LBL_0051PF02371(mitochondrial)
355276.LBL_0470PF03719 PF00333
355276.LBL_0865PF02371(mitochondrial)
355276.LBL_0868PF02371(mitochondrial)
355276.LBL_2213PF02371(mitochondrial)
355276.LBL_2682(PF07479) (PF01210)
355276.LBL_0457(PF00203)(mitochondrial)
355276.LBL_0459PF00189(mitochondrial)
355276.LBL_0448PF02371(mitochondrial)
355276.LBL_0389(PF07479) (PF01210)
355276.LBL_1168(PF03102)(mitochondrial)
355276.LBL_2632PF02371(mitochondrial)
355276.LBL_0177(PF11074)(mitochondrial)
355276.LBL_1198(PF02348)(mitochondrial)
355276.LBL_0111(PF07479) (PF01210)
355276.LBL_0351(PF05406)
355276.LBL_1017(PF05406)
355276.LBL_0934PF02371
355276.LBL_0138PF02371
355276.LBL_1243PF02371
355276.LBL_1065PF02371
355276.LBL_1062(PF04519)
355276.LBL_0390PF02371
355276.LBL_4150PF02371
355276.LBL_4156PF02371
355276.LBL_0437PF00416
355276.LBL_0432PF00828
355276.LBL_0438PF00411
355276.LBL_1896PF02371
355276.LBL_2017(PF04768)
355276.LBL_1941PF02371
355276.LBL_2658(PF00856)
355276.LBL_0933PF10373
355276.LBL_0421(PF00831)
355276.LBL_0422PF00366
355276.LBL_0428PF00347
355276.LBL_2649PF02371
355276.LBL_2484(PF00856)
355276.LBL_0899PF02371
355276.LBL_0896(PF13911)
355276.LBL_0413PF00297
355276.LBL_0412PF00338
355276.LBL_0415PF00276
355276.LBL_0414(PF00573)
355276.LBL_0070PF02371
355276.LBL_3033PF02371
355276.LBL_0240(PF13600)
355276.LBL_0241(PF13600)
355276.LBL_1444PF02371
355276.LBL_0058PF02371
355276.LBL_2114PF02371
355276.LBL_0478PF00411
355276.LBL_0472PF00828
355276.LBL_0471(PF00327)not used
355276.LBL_0477PF00416
355276.LBL_0705PF02371
355276.LBL_0501PF02371
355276.LBL_2340PF02371
355276.LBL_1124(PF03102)
355276.LBL_2230PF02371
355276.LBL_4212PF02371
355276.LBL_0468PF00347
355276.LBL_0461(PF00831)
355276.LBL_0462PF00366
355276.LBL_0463PF00238
355276.LBL_0467PF00410
355276.LBL_0999PF02371
355276.LBL_1154PF02371
355276.LBL_2770PF02371
355276.LBL_2689PF02371
355276.LBL_1073PF02371
355276.LBL_0850PF02371
355276.LBL_0455PF00276
355276.LBL_0454(PF00573)
355276.LBL_0453PF00297
355276.LBL_0452PF00338
355276.LBL_0520PF02371
355276.LBL_0523(PF01195)
355276.LBL_1497PF02371
355276.LBL_2210PF02371
355276.LBL_1146PF02371
355276.LBL_0202PF02371
355276.LBL_0441(PF01196)
355276.LBL_0333PF02371
355276.LBL_1794PF02371
355276.LBL_0533PF02371
355276.LBL_0431(PF00327)not used
355276.LBL_2971PF02371
355276.LBL_2977PF02371
355276.LBL_1174(PF02348)
355276.LBL_1950PF02371
355276.LBL_2792(PF04519)
355276.LBL_1016PF02371
355276.LBL_0017PF02371
355276.LBL_0547PF02371
355276.LBL_0784PF02371
355276.LBL_1304PF02371
355276.LBL_4071PF02371
355276.LBL_0481(PF01196)
355276.LBL_0488PF02371
355276.LBL_0489PF02371
355276.LBL_2952(PF00856)
355276.LBL_1201PF02371
355276.LBL_1990(PF01609)
355276.LBL_0427PF00410
355276.LBL_2628PF02371
355276.LBL_2622(PF05406)
355276.LBL_0423PF00238
355276.LBL_4119PF02371
355276.LBL_0962PF02371
355276.LBL_1566PF02371
355276.LBL_0566PF02371
355276.LBL_0569PF02371
355276.LBL_1697PF02371
355276.LBL_1362PF14956
355276.LBL_1987PF02371
355276.LBL_2326(PF04519)
355276.LBL_2981(PF04519)
355276.LBL_2504PF02371
355276.LBL_2189PF02371
355276.LBL_0373PF02371
355276.LBL_0800(PF01609)
355276.LBL_0114PF02371
355276.LBL_0603PF02371
355276.LBL_2040PF02371
355276.LBL_2193(PF01609)
355276.LBL_0346(PF05406)
355276.LBL_0341PF02371
355276.LBL_1506(PF01195)
355276.LBL_0747PF02371
355276.LBL_0123PF02371
355276.LBL_2458PF02371
355276.LBL_2702PF02371

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================