Metamenu

Effective results for Bordetella avium 197N (eggnog40)

Summary

Number of putative secreted proteins: 61
- Predicted by T4SEpre: 58
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 12 proteins (1 high, 11 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
360910.BAV0588(PF07364) (PF07171)mitochondrial
360910.BAV2103+(mitochondrial)
360910.BAV1193+ER
360910.BAV0037+(mitochondrial)
360910.BAV3091+ER
360910.BAV2840+ER
360910.BAV2608+ER; (ER)
360910.BAV3324+ER
360910.BAV2324+ER; (ER)
360910.BAV1743+(mitochondrial); (plastid)
360910.BAV3164+ER
360910.BAV1966(PF13332)(mitochondrial); (plastid)
360910.BAV2825+mitochondrial
360910.BAV0972+(mitochondrial)
360910.BAV1020+ER
360910.BAV3306+ER
360910.BAV1169+(mitochondrial)
360910.BAV1786+ER; (ER)
360910.BAV1773+ER; (ER)
360910.BAV3363+ER
360910.BAV2025+ER
360910.BAV1539(PF07364) (PF07171)
360910.BAV0497(PF07364) (PF07171)
360910.BAV1261+(mitochondrial)
360910.BAV1717+(plastid)
360910.BAV0915+(mitochondrial)
360910.BAV1002(PF07364) (PF07171)
360910.BAV0171+PF08017
360910.BAV0502(PF07364) (PF07171)
360910.BAV1551(PF13332)(ER)
360910.BAV2754+
360910.BAV0712(PF13332)
360910.BAV2886+
360910.BAV0801+
360910.BAV2090(PF07678)not used
360910.BAV3411+
360910.BAV1258+not used
360910.BAV0038+
360910.BAV1803+not used
360910.BAV2058+not used
360910.BAV3084+not used
360910.BAV2936+
360910.BAV0779+
360910.BAV3215+
360910.BAV2038+
360910.BAV1585+
360910.BAV0381+
360910.BAV3199+
360910.BAV1681+
360910.BAV0403(PF07798)
360910.BAV2949+
360910.BAV1168+
360910.BAV1166+
360910.BAV1418+not used
360910.BAV2155+
360910.BAV0220+
360910.BAV1149+
360910.BAV3154+
360910.BAV2228+
360910.BAV1429(PF07798)
360910.BAV1453+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.1 (1/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.75 (6/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================