Effective results for Exiguobacterium sp. AT1b (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 27 proteins (2 high, 25 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
360911.EAT1b_0683				(PF06725) (PF08239)	ER
360911.EAT1b_1081				(PF16889)	ER
360911.EAT1b_0264				(PF06725)	ER
360911.EAT1b_0908				(PF08239)	ER
360911.EAT1b_1076				(PF08239)	ER
360911.EAT1b_1073				(PF16889)	ER
360911.EAT1b_0759				(PF08239)	ER
360911.EAT1b_1722				(PF03714)	ER
360911.EAT1b_1343				(PF08239)	ER
360911.EAT1b_1256				(PF08239)	ER
360911.EAT1b_1695				(PF06725)	ER
360911.EAT1b_2130				(PF02171)	(mitochondrial)
360911.EAT1b_1021				(PF03714)	ER
360911.EAT1b_0376				PF05705	ER
360911.EAT1b_1171				(PF08239)	ER
360911.EAT1b_1072				(PF16889)	(plastid)
360911.EAT1b_2320				(PF08239)	(ER)
360911.EAT1b_2208				(PF08239)	(ER)
360911.EAT1b_1145				(PF13238)
360911.EAT1b_1522				(PF14328)
360911.EAT1b_0071				(PF06725)
360911.EAT1b_0006				PF00493
360911.EAT1b_0013				(PF06725)
360911.EAT1b_0983				(PF13238)
360911.EAT1b_2342				(PF13238)
360911.EAT1b_0043				(PF06725)
360911.EAT1b_3037				(PF00847)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================