Metamenu

Effective results for Lawsonia intracellularis PHE/MN1-00 (eggnog40)

Summary

Number of putative secreted proteins: 191
- Predicted by EffectiveT3: 61 (high confidence), 80 (low confidence)
- Predicted by EffectiveCCBD: 16 within, 6 before, 17 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 16 proteins (2 high, 14 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
363253.LI0645(>)ER
363253.LI0043+(mitochondrial); (plastid)
363253.LI0127(<)mitochondrial
363253.LI1070+ER
363253.LI1175(>)ER
363253.LI0498(>)ER
363253.LI0956(<)ER; (ER)
363253.LI1045+ER
363253.LI0668+(mitochondrial); plastid
363253.LI0094PF01591(ER)
363253.LI0891(>)mitochondrial; (mitochondrial)
363253.LI0890+ER; (ER)
363253.LI0240+(mitochondrial)
363253.LI0438(PF00328)ER
363253.LI0437(PF00328)ER
363253.LI0803(>)(mitochondrial)
363253.LI1056+ER
363253.LI0234+ER
363253.LI0304+ER
363253.LI0754+ER
363253.LI0735+(mitochondrial)
363253.LI0495(+)mitochondrial
363253.LI0702(+)ER; (ER)
363253.LI0381+(ER)
363253.LI0380+(<)
363253.LI1034+(plastid)
363253.LI0710(+)(>)plastid
363253.LI1041+(plastid)
363253.LI1040+(plastid)
363253.LI0640(+)ER
363253.LI0191(+)(mitochondrial)
363253.LI0664+(plastid)
363253.LI0480(+)(ER)
363253.LI0904+(plastid)
363253.LI0601(+)mitochondrial
363253.LI1144(>)
363253.LI0412(<)
363253.LI0789+
363253.LI0862+
363253.LI0868+
363253.LI1095(+)(mitochondrial)
363253.LI0546(PF05932)
363253.LI0136(PF13023)
363253.LI0644+
363253.LI0145+
363253.LI1077+
363253.LI0857+
363253.LI0919+
363253.LI0071(+)(mitochondrial)
363253.LI0079(>)
363253.LI0329+
363253.LI0777+
363253.LI0170(>)
363253.LI0177+
363253.LI0175+
363253.LI0712+
363253.LI1039+
363253.LI1032(PF05932)
363253.LI1033+
363253.LI1036+
363253.LI0747(+)(>)
363253.LI0408+
363253.LI0815+
363253.LI1042+
363253.LI0928+
363253.LI0920+
363253.LI0100+
363253.LI1159+
363253.LI0031(PF05932)
363253.LI0039(PF05932)
363253.LI0627+
363253.LI0741(+)(mitochondrial)
363253.LI0994(>)
363253.LI0369+
363253.LI0444+
363253.LI0511+
363253.LI1003(+)(plastid)
363253.LI1004+
363253.LI1164(>)not used
363253.LI1165+
363253.LI0849(PF13023)
363253.LI0842+
363253.LI1018(>)
363253.LI0471+
363253.LI0663(PF05932)
363253.LI0666+
363253.LI0667+
363253.LI0665(+)(>)
363253.LI0068+
363253.LI0069+
363253.LI0066+
363253.LI0061+
363253.LI0244+
363253.LI0392(>)
363253.LI0436(PF00328)
363253.LI0323+
363253.LI0505+
363253.LI0761+
363253.LI0023(<)
363253.LI0026+
363253.LI0612PF04733
363253.LI0114(>)
363253.LI1158+
363253.LI1153+not used
363253.LI1157(PF07720)
363253.LI1155+
363253.LI0879+
363253.LI0874(>)
363253.LI0459+
363253.LI0558(PF13023)
363253.LI0080+
363253.LI0453+
363253.LI0724+
363253.LI0013(+)(mitochondrial)
363253.LI0017+
363253.LI0883+
363253.LI0332(+)(PF05693)
363253.LI0502+
363253.LI1136(<)
363253.LI1063+
363253.LI0042(PF05932)
363253.LI0899+
363253.LI0567+
363253.LI0563+
363253.LI0308+
363253.LI1179+
363253.LI1141(+)
363253.LI1094(+)
363253.LI0988(+)
363253.LI0139(+)
363253.LI0858(+)
363253.LI1116(+)
363253.LI0001(+)
363253.LI0633(+)
363253.LI0450(+)
363253.LI0821(+)
363253.LI0121(+)
363253.LI1170(+)
363253.LI0072(+)
363253.LI0075(+)
363253.LI0678(+)
363253.LI0673(+)
363253.LI0675(+)
363253.LI0576(+)
363253.LI0178(+)
363253.LI0499(+)
363253.LI0701(+)
363253.LI0389(+)
363253.LI0771(+)
363253.LI1047(+)
363253.LI1046(+)
363253.LI1043(+)
363253.LI0036(+)
363253.LI1019(+)
363253.LI0447(+)
363253.LI0361(+)
363253.LI0697(+)
363253.LI1183(+)
363253.LI1166(+)
363253.LI0844(+)
363253.LI0265(+)
363253.LI0236(+)
363253.LI0313(+)
363253.LI1127(+)
363253.LI0430(+)
363253.LI1050(+)
363253.LI0934(+)
363253.LI0506(+)
363253.LI0025(+)
363253.LI0296(+)
363253.LI0768(+)
363253.LI0683(+)
363253.LI0748(+)
363253.LI0872(+)
363253.LI1081(+)
363253.LI1080(+)
363253.LI1084(+)
363253.LI0057(+)
363253.LI0989(+)
363253.LI0212(+)
363253.LI0089(+)
363253.LI0425(+)
363253.LI0292(+)
363253.LI0553(+)
363253.LI0046(+)
363253.LI0041(+)
363253.LI0010(+)
363253.LI0568(+)
363253.LI0162(+)
363253.LI0469(+)
363253.LI0310(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 1.4 (14/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================