Effective results for Streptococcus mitis B6 (eggnog40)

Summary

Number of putative secreted proteins: 137
- Predicted by T4SEpre: 99
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 62 proteins (47 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
365659.smi_0345				(PF03644)	mitochondrial
365659.smi_0861			+		ER
365659.smi_1622			+		mitochondrial
365659.smi_1297			+		ER
365659.smi_2024			+		ER
365659.smi_1398				(PF06280)	(ER)
365659.smi_0012			+		ER
365659.smi_1242			+		ER
365659.smi_1653				(PF00344)	ER; (ER)
365659.smi_1278			+		ER
365659.smi_0705				(PF06280)	ER
365659.smi_1885				(PF00344)	mitochondrial
365659.smi_0934			+		ER
365659.smi_0586			+		(mitochondrial); (plastid)
365659.smi_1987			+		ER
365659.smi_1848				(PF03714)	(mitochondrial)
365659.smi_1944			+		ER
365659.smi_0807			+		(mitochondrial); mitochondrial
365659.smi_0002			+		mitochondrial; (mitochondrial)
365659.smi_2040			+		ER
365659.smi_1143			+		ER
365659.smi_1141			+		(ER); (mitochondrial)
365659.smi_1362			+		ER
365659.smi_1331			+		ER
365659.smi_1371				PF04103	ER
365659.smi_1460			+		(mitochondrial)
365659.smi_1656			+	(PF01501)
365659.smi_1522			+		(mitochondrial)
365659.smi_0314			+		(mitochondrial)
365659.smi_0235				PF13936
365659.smi_0231			+
365659.smi_1907				PF13936
365659.smi_1904			+
365659.smi_0986				PF13936
365659.smi_0987				PF13936
365659.smi_1172			+
365659.smi_1355			+
365659.smi_0240				PF13936
365659.smi_0407			+
365659.smi_1918			+
365659.smi_1101			+
365659.smi_1100			+
365659.smi_0747				PF13936
365659.smi_0526			+
365659.smi_0662				PF13936
365659.smi_1364			+
365659.smi_1111			+
365659.smi_1114			+
365659.smi_1731			+
365659.smi_1609			+
365659.smi_0399				PF13936
365659.smi_0260				PF13936
365659.smi_1419				PF13936
365659.smi_0078			+
365659.smi_0479			+
365659.smi_0716			+
365659.smi_1405				PF13936
365659.smi_1408			+
365659.smi_1409				PF13936
365659.smi_1243			+
365659.smi_0042				PF13936
365659.smi_0701			+
365659.smi_1655				(PF01501)
365659.smi_1503			+
365659.smi_0456			+
365659.smi_0296			+
365659.smi_1647			+
365659.smi_1087				PF13936
365659.smi_1466			+
365659.smi_1468				(PF13151)
365659.smi_0591			+
365659.smi_0333			+
365659.smi_1658				(PF01501)
365659.smi_1880			+
365659.smi_1886			+
365659.smi_1863				PF13936
365659.smi_0858				PF13936
365659.smi_1674			+
365659.smi_1073			+
365659.smi_0583			+
365659.smi_0585			+
365659.smi_0618				PF13936
365659.smi_0619				PF13936
365659.smi_0032				PF13936
365659.smi_1524				PF13936
365659.smi_0107				PF13936
365659.smi_1328			+
365659.smi_1857				PF13936
365659.smi_1856				PF13936
365659.smi_0925				PF13936
365659.smi_0929				PF13936
365659.smi_1661				(PF01501)
365659.smi_1068				PF13936
365659.smi_1686			+
365659.smi_0621			+
365659.smi_1447			+
365659.smi_0551			+
365659.smi_0898			+
365659.smi_2089			+
365659.smi_1231				(PF04991)
365659.smi_1230				(PF04991)
365659.smi_1545			+
365659.smi_1303				PF13936
365659.smi_0014				PF13936
365659.smi_0301				PF13936
365659.smi_0789			+
365659.smi_1830				PF13936
365659.smi_0803			+
365659.smi_0201				PF13936
365659.smi_1829				PF13936
365659.smi_1954				PF13936
365659.smi_0976			+
365659.smi_0818			+
365659.smi_1761			+
365659.smi_0140				PF13936
365659.smi_0782				PF13936
365659.smi_0780				PF13936
365659.smi_0781				PF13936
365659.smi_1964				PF13936
365659.smi_1966			+
365659.smi_0963				PF13936
365659.smi_0967			+
365659.smi_1797			+
365659.smi_1798				PF13936
365659.smi_1158				PF13936
365659.smi_0686				PF13936
365659.smi_0779				PF13936
365659.smi_0512				PF13936
365659.smi_0226			+
365659.smi_0425				PF01057
365659.smi_1011			+
365659.smi_2068			+
365659.smi_2061			+
365659.smi_1160			+
365659.smi_1167				PF13936
365659.smi_1168				(PF03714)
365659.smi_0767				(PF04991)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================