Effective results for Rhodobacter sp. SW2 (eggnog40)

Summary

Number of putative secreted proteins: 28
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 28 proteins (0 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
371731.Rsw2DRAFT_0903				(PF03209)	(mitochondrial)
371731.Rsw2DRAFT_0839				(PF11977)	ER
371731.Rsw2DRAFT_0308				(PF02485)	(mitochondrial)
371731.Rsw2DRAFT_2459				(PF09458)	(mitochondrial)
371731.Rsw2DRAFT_0694				(PF16350)	ER
371731.Rsw2DRAFT_1122				(PF01633)	mitochondrial; ER
371731.Rsw2DRAFT_3073				(PF05023)	ER
371731.Rsw2DRAFT_0617				(PF03209)	(mitochondrial)
371731.Rsw2DRAFT_0915				(PF03209)	ER
371731.Rsw2DRAFT_0189				(PF16350)	(ER)
371731.Rsw2DRAFT_0478				(PF01697)	(mitochondrial)
371731.Rsw2DRAFT_0043				(PF01555)	(ER)
371731.Rsw2DRAFT_3177				(PF07930)
371731.Rsw2DRAFT_0811				(PF01633)
371731.Rsw2DRAFT_2158				(PF16350)
371731.Rsw2DRAFT_1306				(PF06119)
371731.Rsw2DRAFT_3322				(PF01555)
371731.Rsw2DRAFT_2676				(PF01555)
371731.Rsw2DRAFT_2675				(PF01555)
371731.Rsw2DRAFT_2672				(PF01555)
371731.Rsw2DRAFT_1294				(PF01555)
371731.Rsw2DRAFT_1121				(PF16350)
371731.Rsw2DRAFT_3008				(PF01555)
371731.Rsw2DRAFT_3009				(PF01555)
371731.Rsw2DRAFT_1674				(PF16350)
371731.Rsw2DRAFT_1673				(PF16350)
371731.Rsw2DRAFT_0854				(PF02485)
371731.Rsw2DRAFT_2723				(PF13875)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================