Effective results for Streptococcus pneumoniae D39 (eggnog40)

Summary

Number of putative secreted proteins: 84
- Predicted by T4SEpre: 91
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 10 proteins (3 high, 7 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
373153.SPD_0151			+		ER
373153.SPD_1857			+		ER
373153.SPD_1037			+		ER
373153.SPD_1038			+		ER
373153.SPD_0002			+		mitochondrial; (mitochondrial)
373153.SPD_1155			+		ER
373153.SPD_1542			+		mitochondrial
373153.SPD_0577			+		mitochondrial; (mitochondrial)
373153.SPD_0889			+		ER
373153.SPD_0888			+		ER
373153.SPD_0868			+		ER
373153.SPD_1139			+		ER
373153.SPD_0716			+		(mitochondrial)
373153.SPD_0710			+		ER
373153.SPD_0090			+		ER; (ER)
373153.SPD_0094			+		ER
373153.SPD_1671			+		ER
373153.SPD_0106				PF09683	(ER); (plastid)
373153.SPD_0821			+		ER
373153.SPD_0595				PF09683	(mitochondrial)
373153.SPD_1997			+		ER
373153.SPD_1519			+		(mitochondrial); (plastid)
373153.SPD_0336			+		ER
373153.SPD_0315				PF02916	(mitochondrial)
373153.SPD_0750			+		(ER)
373153.SPD_1767			+		(mitochondrial)
373153.SPD_0250				(PF03714)	(mitochondrial)
373153.SPD_1786			+
373153.SPD_1781			+
373153.SPD_1834			+
373153.SPD_1520			+
373153.SPD_1522			+
373153.SPD_0927			+
373153.SPD_1033			+
373153.SPD_0495			+
373153.SPD_1840			+
373153.SPD_0311			+
373153.SPD_1201				(PF04991)
373153.SPD_0554			+
373153.SPD_0775			+
373153.SPD_0789			+
373153.SPD_1797			+
373153.SPD_0378			+
373153.SPD_0998			+
373153.SPD_2041			+
373153.SPD_2048			+
373153.SPD_1002				(PF03714)
373153.SPD_1010			+
373153.SPD_0217			+
373153.SPD_1108			+
373153.SPD_0182			+
373153.SPD_1610				(PF08975)
373153.SPD_1590			+
373153.SPD_2069			+
373153.SPD_1346			+
373153.SPD_1129				(PF04991)
373153.SPD_1140			+
373153.SPD_0727			+
373153.SPD_1757			+
373153.SPD_0390			+
373153.SPD_1350			+
373153.SPD_1282			+
373153.SPD_1130				(PF04991)
373153.SPD_0668			+
373153.SPD_1925			+
373153.SPD_1928			+
373153.SPD_0893			+
373153.SPD_1385			+
373153.SPD_0705			+
373153.SPD_0600			+
373153.SPD_0274			+
373153.SPD_0854			+
373153.SPD_1255			+
373153.SPD_0914			+
373153.SPD_0444				(PF03644)
373153.SPD_1660			+
373153.SPD_1065			+
373153.SPD_1479			+
373153.SPD_1474			+
373153.SPD_0831			+
373153.SPD_0212			+
373153.SPD_1182			+
373153.SPD_1510			+
373153.SPD_0339			+

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0 (0/0 KEGG proteins)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================