Metamenu

Effective results for Francisella tularensis subsp. holarctica LVS (eggnog40)

Summary

Number of putative secreted proteins: 89
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 89 proteins (57 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
376619.FTL_0137(PF05686)mitochondrial
376619.FTL_0283(PF03222)ER
376619.FTL_1021(PF00328)ER
376619.FTL_1039(PF04193)ER
376619.FTL_0925(PF00854)ER
376619.FTL_0712(PF00854)ER
376619.FTL_0031(PF00328)ER
376619.FTL_0691(PF00854)ER
376619.FTL_0963(PF00854)mitochondrial
376619.FTL_0378(PF04193)mitochondrial
376619.FTL_1086(PF00854)ER
376619.FTL_0169(PF09419)mitochondrial
376619.FTL_0711(PF00854)ER
376619.FTL_0836(PF03222)(ER)
376619.FTL_0447(PF02931)ER
376619.FTL_1875(PF03222)ER
376619.FTL_0058(PF03222)mitochondrial
376619.FTL_0291(PF03222)ER
376619.FTL_0265(PF04488)(ER)
376619.FTL_0261(PF01000) (PF01193)
376619.FTL_0024(PF03222)(ER)
376619.FTL_1892(PF04488)(ER)
376619.FTL_1317(PF04488)(ER)
376619.FTL_1251(PF00854)(ER)
376619.FTL_0616(PF01000) (PF01193)
376619.FTL_0510PF13358
376619.FTL_0607PF13358
376619.FTL_1643PF13358
376619.FTL_0268PF13358
376619.FTL_0266PF13358
376619.FTL_0263PF13358
376619.FTL_1241PF13358
376619.FTL_1020PF13358
376619.FTL_1815PF13358
376619.FTL_0733PF13358
376619.FTL_0678PF13358
376619.FTL_1757PF13358
376619.FTL_1544PF13358
376619.FTL_0128PF13358
376619.FTL_0018PF13358
376619.FTL_1630PF13358
376619.FTL_1524(PF03222)
376619.FTL_0344(PF10013)not used
376619.FTL_1298PF13358
376619.FTL_0135PF13358
376619.FTL_0004PF13358
376619.FTL_0353PF13358
376619.FTL_1195PF13358
376619.FTL_0107PF13358
376619.FTL_1505PF13358
376619.FTL_0969PF13358
376619.FTL_1886PF13358
376619.FTL_0023PF13358
376619.FTL_0682PF13358
376619.FTL_1402PF13358
376619.FTL_1153PF13358
376619.FTL_1610PF13358
376619.FTL_1891PF13358
376619.FTL_0164PF13358
376619.FTL_0303(PF06414)
376619.FTL_0301(PF06414)
376619.FTL_1369PF13358
376619.FTL_0417PF13358
376619.FTL_0783PF13358
376619.FTL_0314PF13358
376619.FTL_1316PF13358
376619.FTL_1944PF13358
376619.FTL_1127PF13358
376619.FTL_1290PF13358
376619.FTL_0835(PF03222)
376619.FTL_0080PF13358
376619.FTL_0153PF13358
376619.FTL_0339PF13358
376619.FTL_1339(PF00854)
376619.FTL_1446PF13358
376619.FTL_1687PF13358
376619.FTL_1681PF13358
376619.FTL_1925PF13358
376619.FTL_1627PF13358
376619.FTL_0631PF13358
376619.FTL_0185PF13358
376619.FTL_0639(PF13661)
376619.FTL_1462PF13358
376619.FTL_0440PF13358
376619.FTL_1349PF13358
376619.FTL_1718PF13358
376619.FTL_1713PF13358
376619.FTL_0054PF13358
376619.FTL_0503PF13358

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.125 (1/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================