Metamenu

Effective results for Aeromonas hydrophila subsp. hydrophila ATCC 7966 (eggnog40)

Summary

Number of putative secreted proteins: 465
- Predicted by EffectiveT3: 160 (high confidence), 232 (low confidence)
- Predicted by EffectiveCCBD: 16 within, 11 before, 36 behind expected region 25..70aa
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 22 proteins (1 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
380703.AHA_0539(PF01773) (PF07662)(mitochondrial)
380703.AHA_0959(PF01773) (PF07662)ER
380703.AHA_3558+mitochondrial
380703.AHA_0646(PF01773) (PF07662)ER
380703.AHA_3691(PF01773) (PF07662)ER
380703.AHA_2934(PF01773) (PF07662)ER
380703.AHA_0418(PF01902)(mitochondrial)
380703.AHA_1617(PF03222)ER
380703.AHA_2030+ER
380703.AHA_4097(>)ER
380703.AHA_3978+(mitochondrial)
380703.AHA_0381(>)ER
380703.AHA_0161+(mitochondrial)
380703.AHA_0944+ER
380703.AHA_2535+ER
380703.AHA_0978(PF10462)(ER)
380703.AHA_0569(>)ER
380703.AHA_1379(>)(mitochondrial); (ER)
380703.AHA_3111+(mitochondrial); plastid
380703.AHA_2882(>)ER
380703.AHA_1589(<)ER
380703.AHA_0345(>)ER
380703.AHA_0123(PF03222)ER; (ER)
380703.AHA_3057PF05203(mitochondrial); mitochondrial
380703.AHA_1611(>)(mitochondrial)
380703.AHA_4238(>)(ER)
380703.AHA_2094+mitochondrial
380703.AHA_1357(>)ER
380703.AHA_3740(>)ER
380703.AHA_1325+ER
380703.AHA_1039+(ER)
380703.AHA_3780(>)ER
380703.AHA_3095(>)mitochondrial
380703.AHA_3259+ER
380703.AHA_1782+ER
380703.AHA_3166(>)ER
380703.AHA_3083(>)(ER)
380703.AHA_2428(>)ER
380703.AHA_1471(>)ER
380703.AHA_1493(>)ER
380703.AHA_3641(>)ER
380703.AHA_2350(PF03222)ER
380703.AHA_0438(PF01117)ER
380703.AHA_1934+(plastid)
380703.AHA_0409(+)(mitochondrial)
380703.AHA_2106+(plastid)
380703.AHA_4081(+)(mitochondrial)
380703.AHA_2964+(mitochondrial)
380703.AHA_2365+(plastid)
380703.AHA_2803(+)ER
380703.AHA_2828+(plastid)
380703.AHA_4078(+)ER
380703.AHA_0384+(ER)
380703.AHA_1561+(mitochondrial)
380703.AHA_3839+(mitochondrial)
380703.AHA_2844(>)(plastid)
380703.AHA_2992(+)(mitochondrial)
380703.AHA_1698+plastid
380703.AHA_3824+(plastid)
380703.AHA_0562+(plastid)
380703.AHA_0585+(PF03222)
380703.AHA_0587(+)(mitochondrial)
380703.AHA_2858+(plastid)
380703.AHA_2274(+)(mitochondrial)
380703.AHA_1500(+)ER
380703.AHA_2582+(>)
380703.AHA_3858(+)ER
380703.AHA_4089+(plastid)
380703.AHA_1468(+)(ER)
380703.AHA_1831(+)(ER); ER
380703.AHA_0796(+)(mitochondrial); (plastid)
380703.AHA_4009++
380703.AHA_1699+plastid
380703.AHA_2369(+)mitochondrial
380703.AHA_1822(+)(mitochondrial)
380703.AHA_0488(+)(mitochondrial); plastid
380703.AHA_3461+plastid
380703.AHA_2228+plastid
380703.AHA_3869(+)mitochondrial; (plastid)
380703.AHA_3672(+)ER
380703.AHA_2786(+)(ER); (plastid)
380703.AHA_3896(+)(mitochondrial)
380703.AHA_0445(+)(mitochondrial)
380703.AHA_2684(+)(ER); plastid
380703.AHA_2437+(PF03222)
380703.AHA_1710(+)(mitochondrial)
380703.AHA_2690+plastid
380703.AHA_1863+(mitochondrial)
380703.AHA_1486(>)(plastid)
380703.AHA_4202(+)(>)(plastid)
380703.AHA_2998(+)(mitochondrial)
380703.AHA_0501+(plastid)
380703.AHA_2344(+)(mitochondrial); (plastid)
380703.AHA_2584(>)(plastid)
380703.AHA_1583+
380703.AHA_0985+(>)
380703.AHA_1937(+)(mitochondrial)
380703.AHA_1932+
380703.AHA_3994+
380703.AHA_0154+
380703.AHA_3172+
380703.AHA_2578(PF14824)
380703.AHA_1592+
380703.AHA_3371+
380703.AHA_1125+
380703.AHA_1128+
380703.AHA_1947+
380703.AHA_4084(PF12588)
380703.AHA_0092+
380703.AHA_0527+
380703.AHA_0417+
380703.AHA_2367+
380703.AHA_2567(>)
380703.AHA_4064(PF10063)
380703.AHA_1434+
380703.AHA_2570(+)(plastid)
380703.AHA_3816(+)plastid
380703.AHA_0550+
380703.AHA_3777+
380703.AHA_0607+
380703.AHA_1919+
380703.AHA_2825+
380703.AHA_3394(+)(ER)
380703.AHA_2047(<)
380703.AHA_1559+
380703.AHA_1529+
380703.AHA_0548(+)plastid
380703.AHA_1890+
380703.AHA_0769+
380703.AHA_0166(+)+
380703.AHA_1967(+)plastid
380703.AHA_1630+
380703.AHA_3429+
380703.AHA_2839+
380703.AHA_2837+
380703.AHA_2832+
380703.AHA_2544+
380703.AHA_3017+
380703.AHA_4045(+)(mitochondrial)
380703.AHA_1700+
380703.AHA_1709+
380703.AHA_3425+not used
380703.AHA_0941(>)
380703.AHA_2611(>)
380703.AHA_0745+
380703.AHA_1085+
380703.AHA_0577+
380703.AHA_0370+
380703.AHA_0598(>)
380703.AHA_0595(+)(plastid)
380703.AHA_3718+
380703.AHA_0114+
380703.AHA_1974+not used
380703.AHA_1626+
380703.AHA_0626+
380703.AHA_3689(<)
380703.AHA_2840+
380703.AHA_2846+
380703.AHA_2531+
380703.AHA_3006(+)(ER)
380703.AHA_3000+
380703.AHA_3002+
380703.AHA_2125+
380703.AHA_2262+
380703.AHA_2195+
380703.AHA_1570+
380703.AHA_2185(+)(plastid)
380703.AHA_3490(>)
380703.AHA_1367+
380703.AHA_3823+
380703.AHA_3122+
380703.AHA_1983+
380703.AHA_0630+
380703.AHA_1639+
380703.AHA_2857(+)(mitochondrial)
380703.AHA_2520+
380703.AHA_2522(<)
380703.AHA_4024(+)(plastid)
380703.AHA_2295+
380703.AHA_4010+
380703.AHA_2678+
380703.AHA_1218(<)
380703.AHA_1216+
380703.AHA_3019+not used
380703.AHA_4240+
380703.AHA_1196(+)(PF03222)
380703.AHA_4102(+)(mitochondrial)
380703.AHA_1991+
380703.AHA_0093+
380703.AHA_4039(>)
380703.AHA_2647+
380703.AHA_1779+
380703.AHA_1344+
380703.AHA_4026+
380703.AHA_2871+
380703.AHA_2877+
380703.AHA_4231+
380703.AHA_4004+
380703.AHA_2508+
380703.AHA_0016+
380703.AHA_1747(>)
380703.AHA_1740+
380703.AHA_1108+
380703.AHA_3265+
380703.AHA_2477(+)plastid
380703.AHA_3304(<)
380703.AHA_2259+
380703.AHA_1615+
380703.AHA_1690+
380703.AHA_1524+
380703.AHA_3561+
380703.AHA_0301+
380703.AHA_2813+
380703.AHA_4263(<)
380703.AHA_3875(<)
380703.AHA_3876+
380703.AHA_4127(+)(ER)
380703.AHA_4121(PF14824)
380703.AHA_2811+
380703.AHA_0240+
380703.AHA_2583+
380703.AHA_2406(<)
380703.AHA_2311+
380703.AHA_4106+
380703.AHA_1034(+)+
380703.AHA_0327(+)(mitochondrial); not used
380703.AHA_4159+
380703.AHA_0490(PF05706)
380703.AHA_3022+
380703.AHA_0677+
380703.AHA_0674(>)
380703.AHA_4247+
380703.AHA_1252+
380703.AHA_3617+
380703.AHA_3796+
380703.AHA_3797+
380703.AHA_0440+
380703.AHA_3066+
380703.AHA_1619(+)(mitochondrial)
380703.AHA_3619+
380703.AHA_2424+
380703.AHA_0140+
380703.AHA_1249+
380703.AHA_4203+
380703.AHA_0141+
380703.AHA_0273+
380703.AHA_1905+
380703.AHA_3535+
380703.AHA_3656+
380703.AHA_2433+
380703.AHA_2430(+)(ER)
380703.AHA_4191+
380703.AHA_1496+
380703.AHA_2920(+)+
380703.AHA_3509+
380703.AHA_3008(+)(ER)
380703.AHA_1495+
380703.AHA_3562+
380703.AHA_4268+
380703.AHA_0798(>)
380703.AHA_0428+
380703.AHA_3421(+)(>)
380703.AHA_4224+
380703.AHA_4187+
380703.AHA_1484(PF01902)
380703.AHA_0808+
380703.AHA_3519+
380703.AHA_2999+
380703.AHA_0991(<)
380703.AHA_2663+
380703.AHA_0184+
380703.AHA_0211+
380703.AHA_0439+
380703.AHA_0502+
380703.AHA_3581+
380703.AHA_3169(+)(mitochondrial)
380703.AHA_3566+
380703.AHA_3296(<)
380703.AHA_3568(PF14824)
380703.AHA_2587+
380703.AHA_2162(>)
380703.AHA_0926+
380703.AHA_2168+
380703.AHA_1931(+)
380703.AHA_1939(+)
380703.AHA_3998(+)
380703.AHA_0084(+)
380703.AHA_0531(+)
380703.AHA_0538(+)
380703.AHA_1846(+)
380703.AHA_3754(+)
380703.AHA_2576(+)
380703.AHA_3576(+)
380703.AHA_2334(+)
380703.AHA_2715(+)
380703.AHA_3370(+)
380703.AHA_2024(+)not used
380703.AHA_1443(+)
380703.AHA_3650(+)
380703.AHA_3059(+)
380703.AHA_4087(+)
380703.AHA_0708(+)
380703.AHA_3765(+)
380703.AHA_0416(+)
380703.AHA_2490(+)
380703.AHA_4068(+)
380703.AHA_1727(+)
380703.AHA_0894(+)
380703.AHA_3751(+)
380703.AHA_0413(+)
380703.AHA_1042(+)
380703.AHA_1040(+)
380703.AHA_0393(+)
380703.AHA_0771(+)
380703.AHA_2951(+)
380703.AHA_3154(+)
380703.AHA_0605(+)
380703.AHA_1731(+)
380703.AHA_1732(+)
380703.AHA_2734(+)
380703.AHA_2488(+)
380703.AHA_0738(+)
380703.AHA_0619(+)
380703.AHA_2943(+)
380703.AHA_2545(+)
380703.AHA_3035(+)
380703.AHA_4028(+)
380703.AHA_2617(+)
380703.AHA_1569(+)
380703.AHA_1764(+)
380703.AHA_1157(+)
380703.AHA_2810(+)
380703.AHA_0379(+)
380703.AHA_2980(+)
380703.AHA_3714(+)
380703.AHA_2261(+)
380703.AHA_3681(+)
380703.AHA_1162(+)
380703.AHA_1366(+)
380703.AHA_0297(+)
380703.AHA_0589(+)
380703.AHA_1982(+)
380703.AHA_0636(+)
380703.AHA_1638(+)
380703.AHA_2205(+)
380703.AHA_0037(+)
380703.AHA_3218(+)
380703.AHA_2186(+)
380703.AHA_2184(+)
380703.AHA_2182(+)
380703.AHA_2672(+)
380703.AHA_2674(+)
380703.AHA_1502(+)
380703.AHA_2079(+)
380703.AHA_1212(+)
380703.AHA_3938(+)
380703.AHA_0132(+)
380703.AHA_4255(+)
380703.AHA_3595(+)
380703.AHA_0001(+)
380703.AHA_2249(+)
380703.AHA_0918(+)
380703.AHA_2081(+)
380703.AHA_1208(+)
380703.AHA_1341(+)
380703.AHA_3841(+)
380703.AHA_1837(+)
380703.AHA_4233(+)
380703.AHA_4139(+)
380703.AHA_0120(+)
380703.AHA_3055(+)
380703.AHA_3697(+)
380703.AHA_2479(+)
380703.AHA_1696(+)
380703.AHA_4239(+)
380703.AHA_2816(+)
380703.AHA_1358(+)
380703.AHA_3462(+)
380703.AHA_2562(+)
380703.AHA_3910(+)
380703.AHA_1826(+)
380703.AHA_0481(+)
380703.AHA_0245(+)
380703.AHA_0243(+)
380703.AHA_0467(+)
380703.AHA_2224(+)
380703.AHA_1537(+)
380703.AHA_1613(+)
380703.AHA_1321(+)
380703.AHA_0509(+)
380703.AHA_3865(+)
380703.AHA_0648(+)
380703.AHA_1815(+)
380703.AHA_3787(+)
380703.AHA_3677(+)
380703.AHA_2415(+)
380703.AHA_2307(+)
380703.AHA_3526(+)
380703.AHA_3520(+)
380703.AHA_3614(+)
380703.AHA_0315(+)
380703.AHA_0911(+)not used
380703.AHA_3564(+)
380703.AHA_1065(+)
380703.AHA_0267(+)
380703.AHA_0268(+)
380703.AHA_0442(+)
380703.AHA_3068(+)
380703.AHA_3667(+)
380703.AHA_3407(+)
380703.AHA_2331(+)
380703.AHA_1248(+)
380703.AHA_1303(+)
380703.AHA_3538(+)
380703.AHA_0119(+)
380703.AHA_4172(+)
380703.AHA_1906(+)
380703.AHA_2925(+)
380703.AHA_1657(+)
380703.AHA_2696(+)
380703.AHA_3503(+)
380703.AHA_4222(+)
380703.AHA_0870(+)
380703.AHA_3448(+)
380703.AHA_0028(+)
380703.AHA_1654(+)
380703.AHA_3609(+)
380703.AHA_0514(+)
380703.AHA_0513(+)not used
380703.AHA_0518(+)
380703.AHA_3426(+)
380703.AHA_4180(+)
380703.AHA_1481(+)
380703.AHA_2352(+)
380703.AHA_3511(+)
380703.AHA_0844(+)
380703.AHA_2179(+)
380703.AHA_3262(+)not used
380703.AHA_2773(+)
380703.AHA_2004(+)
380703.AHA_1260(+)not used
380703.AHA_0995(+)
380703.AHA_1077(+)
380703.AHA_1074(+)
380703.AHA_2662(+)
380703.AHA_3130(+)
380703.AHA_2743(+)
380703.AHA_0182(+)
380703.AHA_0213(+)
380703.AHA_3983(+)
380703.AHA_1854(+)
380703.AHA_0725(+)
380703.AHA_3299(+)
380703.AHA_2018(+)
380703.AHA_2016(+)
380703.AHA_2010(+)
380703.AHA_1290(+)
380703.AHA_1456(+)
380703.AHA_3552(+)not used
380703.AHA_3359(+)
380703.AHA_1066(+)
380703.AHA_1117(+)
380703.AHA_1112(+)
380703.AHA_1118(+)
380703.AHA_3322(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.125 (9/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================