Metamenu

Effective results for Pseudomonas entomophila L48 (eggnog40)

Summary

Number of putative secreted proteins: 629
- Predicted by EffectiveT3: 176 (high confidence), 294 (low confidence)
- Predicted by EffectiveCCBD: 17 within, 11 before, 37 behind expected region 25..70aa
- Predicted by T4SEpre: 81
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 43 proteins (1 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type III), (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
384676.PSEEN1505+ER
384676.PSEEN4056(PF06039)ER
384676.PSEEN0430+ER
384676.PSEEN2592(>)mitochondrial; (mitochondrial)
384676.PSEEN3239(>)ER
384676.PSEEN1582(>)ER
384676.PSEEN3734+mitochondrial; (mitochondrial)
384676.PSEEN4666+ER
384676.PSEEN4716+(ER)
384676.PSEEN4844(PF07678)ER
384676.PSEEN3409+(mitochondrial); (plastid)
384676.PSEEN1497(>)(mitochondrial)
384676.PSEEN1384(>)(mitochondrial)
384676.PSEEN2846+ER; (mitochondrial)
384676.PSEEN2935+ER
384676.PSEEN4472(<)ER
384676.PSEEN1154+ER
384676.PSEEN0950(>)ER; (ER)
384676.PSEEN0391+(mitochondrial)
384676.PSEEN2719+(ER)
384676.PSEEN3050+ER
384676.PSEEN1848+(mitochondrial); (plastid)
384676.PSEEN1089(>)(mitochondrial)
384676.PSEEN4879(PF11162)ER
384676.PSEEN3576+ER
384676.PSEEN3377+ER
384676.PSEEN3412(>)ER
384676.PSEEN4086+ER
384676.PSEEN2945+mitochondrial
384676.PSEEN1623+ER
384676.PSEEN2378(PF11162)ER
384676.PSEEN0220(>)ER
384676.PSEEN1823+ER
384676.PSEEN5505+ER
384676.PSEEN3590(>)ER
384676.PSEEN0486(>)mitochondrial; (mitochondrial)
384676.PSEEN5292+(mitochondrial)
384676.PSEEN1877+(mitochondrial)
384676.PSEEN1728+ER
384676.PSEEN0580+mitochondrial
384676.PSEEN1245+ER
384676.PSEEN2751(PF11162)ER
384676.PSEEN2116+(ER)
384676.PSEEN1841+ER
384676.PSEEN1843+ER
384676.PSEEN0903+ER
384676.PSEEN3748(PF06039)ER
384676.PSEEN5164+ER; (mitochondrial)
384676.PSEEN4351+(ER)
384676.PSEEN4681+ER
384676.PSEEN5179+ER
384676.PSEEN5045+ER
384676.PSEEN3647(PF01852)ER
384676.PSEEN1937+(ER)
384676.PSEEN3267+ER
384676.PSEEN2538+ER
384676.PSEEN2312+ER
384676.PSEEN1538(<)ER
384676.PSEEN5153+ER
384676.PSEEN3466+(mitochondrial); (plastid)
384676.PSEEN5140(PF06293)(mitochondrial)
384676.PSEEN2641(PF01761)(ER)
384676.PSEEN2838+ER
384676.PSEEN4030+ER
384676.PSEEN5137(PF06293)ER; (ER)
384676.PSEEN2970+ER
384676.PSEEN3072+(PF05593)(ER)
384676.PSEEN4087+ER
384676.PSEEN4801+ER
384676.PSEEN2357(PF06039)ER
384676.PSEEN2926(PF01852)ER
384676.PSEEN3791(>)ER
384676.PSEEN3040(>)mitochondrial; (ER)
384676.PSEEN1853+(mitochondrial); (plastid)
384676.PSEEN2126+ER
384676.PSEEN2123+ER
384676.PSEEN2876(+)ER
384676.PSEEN5274+(PF05593)
384676.PSEEN0296+(mitochondrial)
384676.PSEEN0619+(plastid)
384676.PSEEN1950+(<)
384676.PSEEN1777+(plastid)
384676.PSEEN3553+(plastid)
384676.PSEEN4422(+)(ER)
384676.PSEEN0948(+)ER
384676.PSEEN5010(+)mitochondrial
384676.PSEEN2431(+)(mitochondrial); plastid
384676.PSEEN0577(+)ER
384676.PSEEN4011(+)ER; (ER)
384676.PSEEN2898++
384676.PSEEN0150(+)mitochondrial
384676.PSEEN3826+plastid
384676.PSEEN3833++
384676.PSEEN3832+(plastid)
384676.PSEEN2987+(plastid)
384676.PSEEN0279(+)(mitochondrial)
384676.PSEEN4696(+)(ER)
384676.PSEEN2385+(>)
384676.PSEEN3016(+)(mitochondrial)
384676.PSEEN3743(+)(ER)
384676.PSEEN4596+(PF05593)
384676.PSEEN1091(>)(mitochondrial)
384676.PSEEN2805(+)(mitochondrial); plastid
384676.PSEEN5316+(ER)
384676.PSEEN3864(+)+(ER)
384676.PSEEN0845+(plastid)
384676.PSEEN3788(+)(ER)
384676.PSEEN1333(+)(mitochondrial)
384676.PSEEN2473+(plastid)
384676.PSEEN1537+(ER)
384676.PSEEN0261+(PF04371)
384676.PSEEN1078(<)+
384676.PSEEN4203(+)ER
384676.PSEEN1076(+)ER
384676.PSEEN1807+(ER)
384676.PSEEN5135(+)ER
384676.PSEEN4179+(plastid)
384676.PSEEN3992(PF05593)(ER)
384676.PSEEN4941++
384676.PSEEN4616(+)(mitochondrial)
384676.PSEEN4182+
384676.PSEEN2490+
384676.PSEEN0757(>)
384676.PSEEN1570+
384676.PSEEN5419+
384676.PSEEN2649(+)(plastid)
384676.PSEEN4421+
384676.PSEEN4423+
384676.PSEEN2338+
384676.PSEEN0962(PF05141)
384676.PSEEN0964(PF05141)
384676.PSEEN4515+
384676.PSEEN1162+
384676.PSEEN4601+
384676.PSEEN1550+
384676.PSEEN1813+
384676.PSEEN2999+not used
384676.PSEEN2043+not used
384676.PSEEN4190(+)plastid
384676.PSEEN4195+
384676.PSEEN4194(>)
384676.PSEEN2865+
384676.PSEEN2862+
384676.PSEEN2869+
384676.PSEEN3735(>)
384676.PSEEN4862+
384676.PSEEN4059+
384676.PSEEN4455(PF06293)
384676.PSEEN1172(PF12255)
384676.PSEEN5106(+)(mitochondrial)
384676.PSEEN1254+
384676.PSEEN0286+
384676.PSEEN5071+
384676.PSEEN0970+
384676.PSEEN0977(>)
384676.PSEEN2452(+)(mitochondrial)
384676.PSEEN1956+
384676.PSEEN5493+
384676.PSEEN0512+
384676.PSEEN3087+
384676.PSEEN1775(>)
384676.PSEEN0608+
384676.PSEEN3669+
384676.PSEEN3430(+)+
384676.PSEEN2855+
384676.PSEEN4078+
384676.PSEEN0364+
384676.PSEEN3945(>)
384676.PSEEN4289+
384676.PSEEN0949+
384676.PSEEN0383+
384676.PSEEN4664(PF13207)
384676.PSEEN1266(>)
384676.PSEEN1832+
384676.PSEEN1944+not used
384676.PSEEN0565+
384676.PSEEN5530+
384676.PSEEN5327+
384676.PSEEN3543+
384676.PSEEN0709(+)+
384676.PSEEN0701(PF03538)
384676.PSEEN0703+
384676.PSEEN1383(+)(plastid)
384676.PSEEN3714+
384676.PSEEN2622+
384676.PSEEN3972+
384676.PSEEN0952(>)
384676.PSEEN4384PF07217
384676.PSEEN4657+not used
384676.PSEEN4870(>)
384676.PSEEN4871+
384676.PSEEN5528(+)(plastid)
384676.PSEEN1974+
384676.PSEEN1715(PF02460)
384676.PSEEN2368+
384676.PSEEN4256(>)
384676.PSEEN5381(+)(mitochondrial)
384676.PSEEN0438(+)(>)
384676.PSEEN4019+
384676.PSEEN5039+
384676.PSEEN0148(+)(plastid)
384676.PSEEN0140+
384676.PSEEN3967+
384676.PSEEN1420(PF05593)
384676.PSEEN0921(+)(<)
384676.PSEEN2764+
384676.PSEEN3180+
384676.PSEEN3146+
384676.PSEEN3387(+)(plastid)
384676.PSEEN3232+
384676.PSEEN2082+
384676.PSEEN0542(PF15588)
384676.PSEEN0541(PF05593)
384676.PSEEN5515+
384676.PSEEN2901+
384676.PSEEN3366+
384676.PSEEN2325(<)
384676.PSEEN0153+
384676.PSEEN5282(+)(plastid)
384676.PSEEN2955+
384676.PSEEN2954+
384676.PSEEN2953+
384676.PSEEN3604+
384676.PSEEN0809+
384676.PSEEN0807+
384676.PSEEN1289+
384676.PSEEN2417+
384676.PSEEN3787+
384676.PSEEN3176+
384676.PSEEN3077+
384676.PSEEN4748+
384676.PSEEN2569+
384676.PSEEN2567+
384676.PSEEN2565+
384676.PSEEN5508(+)+
384676.PSEEN3593(+)(PF05593)
384676.PSEEN2342+
384676.PSEEN4819+
384676.PSEEN0734+
384676.PSEEN2488(>)
384676.PSEEN5293+
384676.PSEEN5296+
384676.PSEEN2960+
384676.PSEEN0872+
384676.PSEEN5066+
384676.PSEEN3831+
384676.PSEEN2989+
384676.PSEEN5509+
384676.PSEEN3845(>)
384676.PSEEN0907+
384676.PSEEN5503(+)(mitochondrial)
384676.PSEEN3163+
384676.PSEEN4755+
384676.PSEEN3589+
384676.PSEEN4936(+)(plastid)
384676.PSEEN2354(+)(ER)
384676.PSEEN2191(PF04371)
384676.PSEEN1026+
384676.PSEEN1732(<)
384676.PSEEN1733+
384676.PSEEN1208+
384676.PSEEN4511(+)(mitochondrial)
384676.PSEEN4860+
384676.PSEEN2752+
384676.PSEEN2181(+)plastid
384676.PSEEN0913+
384676.PSEEN0919(<)
384676.PSEEN5186+
384676.PSEEN1085+
384676.PSEEN4909+
384676.PSEEN1660+
384676.PSEEN2038+
384676.PSEEN0594+
384676.PSEEN0635+
384676.PSEEN1513(+)(PF06293)
384676.PSEEN3921(>)
384676.PSEEN0282+
384676.PSEEN3304(>)
384676.PSEEN4591+
384676.PSEEN4680(>)
384676.PSEEN1276(+)ER
384676.PSEEN2514(PF05593)
384676.PSEEN4575+
384676.PSEEN3039+
384676.PSEEN5427+
384676.PSEEN5424+
384676.PSEEN3999+
384676.PSEEN4919(>)
384676.PSEEN4886+
384676.PSEEN4885+
384676.PSEEN5300(+)+
384676.PSEEN4110+
384676.PSEEN5451(+)(ER)
384676.PSEEN3643(+)(mitochondrial)
384676.PSEEN1412+
384676.PSEEN0203+
384676.PSEEN2684+
384676.PSEEN3794+
384676.PSEEN4976+
384676.PSEEN3861+
384676.PSEEN5223(+)(>)
384676.PSEEN5224+
384676.PSEEN4571(+)(plastid)
384676.PSEEN3007(+)(plastid)
384676.PSEEN5543+
384676.PSEEN0447(<)
384676.PSEEN3900+
384676.PSEEN0998+
384676.PSEEN4142(>)
384676.PSEEN1055+
384676.PSEEN0208+
384676.PSEEN2057+
384676.PSEEN3784(+)+
384676.PSEEN5307+
384676.PSEEN2789+
384676.PSEEN2785+
384676.PSEEN4156+
384676.PSEEN1430(+)plastid
384676.PSEEN5232+
384676.PSEEN0893(PF06039)
384676.PSEEN2539+
384676.PSEEN4990(+)plastid
384676.PSEEN3305+
384676.PSEEN5444+
384676.PSEEN5441+
384676.PSEEN2484+
384676.PSEEN3758+
384676.PSEEN3759+
384676.PSEEN4971+
384676.PSEEN0007+
384676.PSEEN5362+
384676.PSEEN3982+
384676.PSEEN4159+
384676.PSEEN1476+
384676.PSEEN3841(+)(plastid)
384676.PSEEN0863(PF05593)
384676.PSEEN1542+
384676.PSEEN1442(>)
384676.PSEEN1135(PF05593)
384676.PSEEN5068+
384676.PSEEN1464(<)
384676.PSEEN0240+
384676.PSEEN1919+
384676.PSEEN4632(PF04371)
384676.PSEEN3559+
384676.PSEEN0089+
384676.PSEEN4090(>)
384676.PSEEN2109+
384676.PSEEN5168+
384676.PSEEN4201(<)
384676.PSEEN3473+
384676.PSEEN3475+
384676.PSEEN4977+
384676.PSEEN4264+
384676.PSEEN3854+
384676.PSEEN3857+
384676.PSEEN5138(PF06293)
384676.PSEEN5139(PF06293)
384676.PSEEN3074+
384676.PSEEN4629(PF04371)
384676.PSEEN4219+
384676.PSEEN3010(+)(plastid)
384676.PSEEN0524+
384676.PSEEN4882(PF11162)
384676.PSEEN1131+
384676.PSEEN0841+
384676.PSEEN4088(+)(ER)
384676.PSEEN2113(PF05593)
384676.PSEEN4905+
384676.PSEEN0241+
384676.PSEEN1423+
384676.PSEEN0335(PF01761)
384676.PSEEN4325+
384676.PSEEN3342+
384676.PSEEN5264+
384676.PSEEN5266+
384676.PSEEN2668+
384676.PSEEN5054+
384676.PSEEN2255+
384676.PSEEN2013+
384676.PSEEN4611+
384676.PSEEN5318+
384676.PSEEN2474(PF01761)
384676.PSEEN2011+
384676.PSEEN5474+
384676.PSEEN5472+
384676.PSEEN2296+
384676.PSEEN2055+
384676.PSEEN2058(>)
384676.PSEEN2640+
384676.PSEEN3455(+)
384676.PSEEN1529(+)
384676.PSEEN4055(+)
384676.PSEEN5221(+)
384676.PSEEN0293(+)
384676.PSEEN1434(+)
384676.PSEEN0961(+)
384676.PSEEN2468(+)
384676.PSEEN2044(+)
384676.PSEEN0618(+)
384676.PSEEN3529(+)
384676.PSEEN3424(+)
384676.PSEEN5089(+)
384676.PSEEN1563(+)
384676.PSEEN4114(+)
384676.PSEEN1174(+)
384676.PSEEN1178(+)
384676.PSEEN3959(+)
384676.PSEEN2735(+)
384676.PSEEN4679(+)
384676.PSEEN4670(+)
384676.PSEEN4671(+)
384676.PSEEN1959(+)
384676.PSEEN0514(+)
384676.PSEEN0517(+)
384676.PSEEN4852(+)
384676.PSEEN3086(+)
384676.PSEEN4155(+)
384676.PSEEN2149(+)
384676.PSEEN2143(+)
384676.PSEEN4071(+)
384676.PSEEN5252(+)
384676.PSEEN1166(+)
384676.PSEEN2637(+)
384676.PSEEN2634(+)
384676.PSEEN5006(+)
384676.PSEEN0848(+)
384676.PSEEN4437(+)
384676.PSEEN4667(+)
384676.PSEEN2609(+)
384676.PSEEN2298+
384676.PSEEN0568(+)
384676.PSEEN4845(+)
384676.PSEEN5532(+)
384676.PSEEN3099(+)
384676.PSEEN1764(+)
384676.PSEEN3401(+)
384676.PSEEN1491(+)
384676.PSEEN5395(+)
384676.PSEEN2848(+)
384676.PSEEN3976(+)
384676.PSEEN3979(+)
384676.PSEEN0958(+)
384676.PSEEN4382(+)
384676.PSEEN3051(+)
384676.PSEEN4654(+)
384676.PSEEN2381(+)
384676.PSEEN4566(+)
384676.PSEEN2542(+)
384676.PSEEN4873(+)
384676.PSEEN2093(+)
384676.PSEEN3574(+)
384676.PSEEN3376(+)
384676.PSEEN5351(+)
384676.PSEEN0719(+)
384676.PSEEN5383(+)
384676.PSEEN2884(+)
384676.PSEEN4013(+)
384676.PSEEN0146(+)
384676.PSEEN2895(+)
384676.PSEEN1037(+)
384676.PSEEN5026(+)
384676.PSEEN5025(+)
384676.PSEEN0927(+)
384676.PSEEN2760(+)
384676.PSEEN3149(+)
384676.PSEEN3384(+)
384676.PSEEN2552(+)
384676.PSEEN4868(+)
384676.PSEEN1639(+)
384676.PSEEN5205(+)
384676.PSEEN1524(+)
384676.PSEEN3917(+)
384676.PSEEN2888(+)
384676.PSEEN1049(+)
384676.PSEEN3823(+)
384676.PSEEN0801(+)
384676.PSEEN2771(+)
384676.PSEEN2415(+)
384676.PSEEN1195(+)
384676.PSEEN3476(+)
384676.PSEEN3285(+)
384676.PSEEN3283(+)
384676.PSEEN4379(+)
384676.PSEEN1150(+)
384676.PSEEN2344(+)
384676.PSEEN2188(+)
384676.PSEEN2184(+)
384676.PSEEN0731(+)
384676.PSEEN0028(+)
384676.PSEEN0234(+)
384676.PSEEN1051(+)
384676.PSEEN2982(+)
384676.PSEEN5199(+)
384676.PSEEN1989(+)
384676.PSEEN2476(+)
384676.PSEEN3581(+)
384676.PSEEN4809(+)
384676.PSEEN5158(+)
384676.PSEEN2585(+)
384676.PSEEN4025(+)
384676.PSEEN3358(+)
384676.PSEEN0052(+)
384676.PSEEN2973(+)
384676.PSEEN4119(+)
384676.PSEEN4118(+)
384676.PSEEN4232(+)
384676.PSEEN2915(+)
384676.PSEEN4348(+)
384676.PSEEN0823(+)
384676.PSEEN1609(+)
384676.PSEEN3116(+)
384676.PSEEN1081(+)
384676.PSEEN3029(+)
384676.PSEEN1882(+)
384676.PSEEN3014(+)
384676.PSEEN0048(+)
384676.PSEEN3635(+)
384676.PSEEN4039(+)
384676.PSEEN1310(+)
384676.PSEEN3819(+)
384676.PSEEN0853(+)
384676.PSEEN1270(+)
384676.PSEEN3103(+)
384676.PSEEN1092(+)
384676.PSEEN3032(+)
384676.PSEEN1890(+)
384676.PSEEN1895(+)
384676.PSEEN5553(+)
384676.PSEEN0699(+)
384676.PSEEN3321(+)
384676.PSEEN2028(+)
384676.PSEEN3255(+)
384676.PSEEN0072(+)
384676.PSEEN3648(+)
384676.PSEEN1419(+)
384676.PSEEN1417(+)
384676.PSEEN4174(+)
384676.PSEEN4365(+)
384676.PSEEN3371(+)
384676.PSEEN3840(+)
384676.PSEEN0098(+)
384676.PSEEN3365(+)
384676.PSEEN3009(+)
384676.PSEEN1935(+)
384676.PSEEN2164(+)
384676.PSEEN3313(+)
384676.PSEEN1625(+)
384676.PSEEN2302(+)
384676.PSEEN2301(+)
384676.PSEEN2019(+)
384676.PSEEN4140(+)
384676.PSEEN1828(+)
384676.PSEEN0270(+)
384676.PSEEN3783(+)
384676.PSEEN3785(+)
384676.PSEEN1337(+)
384676.PSEEN2782(+)
384676.PSEEN2780(+)not used
384676.PSEEN3879(+)
384676.PSEEN2658(+)
384676.PSEEN2659(+)
384676.PSEEN1295(+)
384676.PSEEN4550(+)
384676.PSEEN1920(+)
384676.PSEEN2663(+)
384676.PSEEN2314(+)
384676.PSEEN0786(+)
384676.PSEEN3983(+)
384676.PSEEN1781(+)
384676.PSEEN3468(+)
384676.PSEEN1227(+)
384676.PSEEN1229(+)
384676.PSEEN3689(+)
384676.PSEEN5201(+)
384676.PSEEN2647(+)
384676.PSEEN2646(+)
384676.PSEEN1446(+)
384676.PSEEN4336(+)
384676.PSEEN2252(+)
384676.PSEEN1225(+)
384676.PSEEN1220(+)
384676.PSEEN2498(+)
384676.PSEEN4897(+)
384676.PSEEN0793(+)
384676.PSEEN0799(+)
384676.PSEEN4948(+)
384676.PSEEN0647(+)
384676.PSEEN3672(+)
384676.PSEEN1685(+)
384676.PSEEN1071(+)
384676.PSEEN1033(+)
384676.PSEEN3691(+)
384676.PSEEN4257(+)
384676.PSEEN2671(+)
384676.PSEEN4534(+)
384676.PSEEN1909(+)
384676.PSEEN3223(+)
384676.PSEEN4391(+)
384676.PSEEN1268(+)
384676.PSEEN5469(+)
384676.PSEEN2064(+)
384676.PSEEN3219(+)
384676.PSEEN3213(+)
384676.PSEEN3212(+)
384676.PSEEN3500(+)
384676.PSEEN0631(+)
384676.PSEEN0633(+)
384676.PSEEN4178(+)
384676.PSEEN4804(+)
384676.PSEEN3488(+)
384676.PSEEN4800(+)
384676.PSEEN0744(+)
384676.PSEEN3440(+)
384676.PSEEN4187(+)
384676.PSEEN2925(+)
384676.PSEEN2921(+)
384676.PSEEN5122(+)
384676.PSEEN5129(+)
384676.PSEEN4431(+)
384676.PSEEN1568(+)
384676.PSEEN2683(+)
384676.PSEEN3042(+)
384676.PSEEN2393(+)
384676.PSEEN1809(+)
384676.PSEEN1869(+)
384676.PSEEN2632(+)
384676.PSEEN2633(+)
384676.PSEEN4220(+)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: YES (FDR = 12.5 %)
    Estimated copy number = 0.5 (5/10 KEGG proteins)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.5 (20/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================