Metamenu

Effective results for Streptococcus suis 05ZYH33 (eggnog40)

Summary

Number of putative secreted proteins: 98
- Predicted by T4SEpre: 85
- Predicted by EffectiveELD: 14 eukaryotic-like domains, contained in 31 proteins (3 high, 28 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391295.SSU05_2132(PF02446)(mitochondrial)
391295.SSU05_0938+mitochondrial; (mitochondrial)
391295.SSU05_1754+ER
391295.SSU05_0801+(ER)
391295.SSU05_1215(PF08124)(mitochondrial)
391295.SSU05_0330+ER
391295.SSU05_0925+mitochondrial
391295.SSU05_2070(PF05257)ER; (ER)
391295.SSU05_2099(PF05738)ER
391295.SSU05_1682+(ER)
391295.SSU05_0002+mitochondrial; (mitochondrial)
391295.SSU05_0012+ER
391295.SSU05_0273+ER
391295.SSU05_1258+mitochondrial
391295.SSU05_0474(PF05738)ER
391295.SSU05_1476+mitochondrial
391295.SSU05_2104(PF05738)ER
391295.SSU05_1266+(ER); (plastid)
391295.SSU05_1134+(mitochondrial)
391295.SSU05_1603+(ER)
391295.SSU05_0548+ER
391295.SSU05_0414+mitochondrial; (mitochondrial)
391295.SSU05_2065(PF03714)(mitochondrial)
391295.SSU05_1833+(mitochondrial)
391295.SSU05_0981+(mitochondrial)
391295.SSU05_0096(PF01196)(mitochondrial); not used
391295.SSU05_1979+
391295.SSU05_0625+
391295.SSU05_0896+
391295.SSU05_0939+
391295.SSU05_2064(PF03714)
391295.SSU05_0020(PF05257)
391295.SSU05_1214(PF08124)
391295.SSU05_0749+
391295.SSU05_0812(PF06280)
391295.SSU05_0103+
391295.SSU05_0036+
391295.SSU05_1024+
391295.SSU05_0376+
391295.SSU05_0481+
391295.SSU05_0791+
391295.SSU05_0864PF00910
391295.SSU05_1521+
391295.SSU05_0003PF00609
391295.SSU05_0001+
391295.SSU05_1238+
391295.SSU05_0658+
391295.SSU05_0120+
391295.SSU05_0270+
391295.SSU05_1796+
391295.SSU05_0840(PF08797)
391295.SSU05_2131(PF02446)
391295.SSU05_1814+
391295.SSU05_0695+
391295.SSU05_0857(PF08797)
391295.SSU05_2127(PF05257)
391295.SSU05_1678+
391295.SSU05_0140+
391295.SSU05_1273+
391295.SSU05_1474(PF13127)
391295.SSU05_1293+
391295.SSU05_2100(PF05738)
391295.SSU05_2103(PF05738)
391295.SSU05_1267+
391295.SSU05_1260+
391295.SSU05_0186+
391295.SSU05_0089+
391295.SSU05_0725+
391295.SSU05_1922(PF03644)
391295.SSU05_1440(PF01643)not used
391295.SSU05_0091+
391295.SSU05_0097(PF01196)
391295.SSU05_0545+
391295.SSU05_0540+
391295.SSU05_1439(PF01643)
391295.SSU05_1438(PF01643)
391295.SSU05_1386+
391295.SSU05_0393(PF02446)
391295.SSU05_0392(PF02446)
391295.SSU05_1097+
391295.SSU05_0377+
391295.SSU05_0416+
391295.SSU05_1941+
391295.SSU05_0968(PF05257)
391295.SSU05_1898+
391295.SSU05_1391+
391295.SSU05_1555+
391295.SSU05_0564PF02916
391295.SSU05_0560+
391295.SSU05_1371+
391295.SSU05_1771+
391295.SSU05_1343+
391295.SSU05_0614+
391295.SSU05_2055+
391295.SSU05_0830+
391295.SSU05_1982(PF06280)
391295.SSU05_2181+
391295.SSU05_0168+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================