Effective results for Phaeobacter inhibens DSM 17395 (eggnog40)

Summary

Number of putative secreted proteins: 56
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 56 proteins (1 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391619.RGBS107_00585(PF01571) (PF08669) (PF16350)ER
391619.RGBS107_14136(PF01571) (PF08669) (PF16350)ER
391619.RGBS107_19988(PF01571) (PF08669) (PF16350)(mitochondrial)
391619.RGBS107_09516(PF01695)ER; (ER)
391619.RGBS107_01470(PF01695)ER; (ER)
391619.RGBS107_02808(PF01571) (PF08669) (PF16350)
391619.RGBS107_06674(PF13704)mitochondrial
391619.RGBS107_18913(PF13704)(mitochondrial)
391619.RGBS107_17133(PF01695)ER; (ER)
391619.RGBS107_07094(PF01695)ER; (ER)
391619.RGBS107_18908(PF13704)(ER)
391619.RGBS107_18848(PF01571) (PF08669) (PF16350)
391619.RGBS107_04008(PF01695)ER; (ER)
391619.RGBS107_18893(PF01571) (PF08669) (PF16350)
391619.RGBS107_19928(PF01695)ER; (ER)
391619.RGBS107_16783(PF01695)ER; (ER)
391619.RGBS107_05274(PF01571) (PF08669) (PF16350)
391619.RGBS107_19138(PF01695)ER; (ER)
391619.RGBS107_00745(PF01695)ER; (ER)
391619.RGBS107_10501(PF01695)ER; (ER)
391619.RGBS107_05264(PF01571) (PF08669) (PF16350)
391619.RGBS107_05554(PF01695)ER; (ER)
391619.RGBS107_19198(PF01571) (PF08669)
391619.RGBS107_11457(PF01571) (PF08669)
391619.RGBS107_00370(PF01571) (PF08669)
391619.RGBS107_05934(PF13704)(plastid)
391619.RGBS107_00530(PF01571) (PF08669)
391619.RGBS107_16703(PF01571) (PF08669)
391619.RGBS107_20168(PF01571) (PF08669)
391619.RGBS107_18173PF11781
391619.RGBS107_12387(PF07366)
391619.RGBS107_12562(PF13704)
391619.RGBS107_10941(PF00815)
391619.RGBS107_02373(PF07366)
391619.RGBS107_06679(PF02485)
391619.RGBS107_13911(PF07366)
391619.RGBS107_12372(PF13704)
391619.RGBS107_04303(PF00815)
391619.RGBS107_02338(PF07366)
391619.RGBS107_06359(PF09585)
391619.RGBS107_06354(PF09585)
391619.RGBS107_18843(PF01633)
391619.RGBS107_03438(PF02485)
391619.RGBS107_18888(PF01633)
391619.RGBS107_09731(PF13704)
391619.RGBS107_19963(PF00815)
391619.RGBS107_00255(PF01695)not used
391619.RGBS107_00490(PF13704)
391619.RGBS107_02388(PF07366)
391619.RGBS107_02368(PF00815)
391619.RGBS107_02363(PF07366)
391619.RGBS107_14046(PF07366)
391619.RGBS107_00460(PF01695)
391619.RGBS107_16121(PF01695)
391619.RGBS107_00270(PF01695)
391619.RGBS107_19768(PF09458)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================