Effective results for Thioalkalivibrio sulfidiphilus HL-EbGr7 (eggnog40)

Summary

Number of putative secreted proteins: 38
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 38 proteins (1 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
396588.Tgr7_0077				(PF12974)	ER
396588.Tgr7_0913				(PF12974)	ER
396588.Tgr7_0645				(PF12974)	ER
396588.Tgr7_0806				(PF12974)	ER
396588.Tgr7_1818				(PF12974)	ER
396588.Tgr7_0625				(PF06695)	ER
396588.Tgr7_2070				(PF02635)	ER
396588.Tgr7_1117				(PF12974)	ER
396588.Tgr7_3212				(PF02635)	ER
396588.Tgr7_3213				(PF02635)	(mitochondrial)
396588.Tgr7_0564				(PF02635)	ER
396588.Tgr7_2490				(PF02635)	ER
396588.Tgr7_0177				(PF00862)	(ER)
396588.Tgr7_2208				(PF01597)
396588.Tgr7_2209				(PF02635)
396588.Tgr7_2210				(PF01597)
396588.Tgr7_0465				(PF13366)
396588.Tgr7_2187				(PF02635)
396588.Tgr7_2188				(PF02635)
396588.Tgr7_2438				(PF02732)
396588.Tgr7_1298				(PF12974)
396588.Tgr7_0478				(PF06258)
396588.Tgr7_0476				(PF06258)
396588.Tgr7_0707				(PF12899)
396588.Tgr7_2758				(PF01597)
396588.Tgr7_1604				(PF10013)	not used
396588.Tgr7_2897				(PF12974)
396588.Tgr7_2386				(PF13366)
396588.Tgr7_3134				(PF01597)
396588.Tgr7_1132				PF05887
396588.Tgr7_2876				(PF13366)
396588.Tgr7_2451				(PF12974)
396588.Tgr7_1692				(PF05189)
396588.Tgr7_1753				(PF02635)
396588.Tgr7_0976				(PF13366)
396588.Tgr7_3078				(PF06695)
396588.Tgr7_1242				(PF13366)
396588.Tgr7_1141				(PF02635)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================