Effective results for Thioalkalivibrio sp. K90mix (eggnog40)

Summary

Number of putative secreted proteins: 42
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 42 proteins (0 high, 42 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
396595.TK90_2445				(PF14397)	mitochondrial
396595.TK90_2329				(PF03625)	ER
396595.TK90_0095				(PF02635)	ER
396595.TK90_2301				(PF02635)	ER
396595.TK90_0692				(PF02635)	ER
396595.TK90_2534				(PF14397)	(mitochondrial)
396595.TK90_0691				(PF02635)	ER
396595.TK90_1764				(PF03625)	ER
396595.TK90_1760				(PF02635)	ER
396595.TK90_1301				(PF03625)	mitochondrial
396595.TK90_0952				(PF02635)	ER
396595.TK90_0823				(PF03190)	(ER)
396595.TK90_2431				(PF14397)	mitochondrial
396595.TK90_0616				(PF14397)	(mitochondrial)
396595.TK90_1542				(PF02371)
396595.TK90_0639				(PF02635)
396595.TK90_0638				(PF01597)
396595.TK90_1024				(PF02732)
396595.TK90_0511				(PF02635)
396595.TK90_0516				(PF12038)
396595.TK90_1902				(PF03190)
396595.TK90_0663				(PF02635)
396595.TK90_2037				(PF02371)
396595.TK90_2313				(PF12899)
396595.TK90_1687				(PF02371)
396595.TK90_1660				(PF01786)
396595.TK90_0640				(PF01597)
396595.TK90_0422				(PF02371)
396595.TK90_1892				(PF03625)
396595.TK90_2066				(PF02371)
396595.TK90_2068				(PF02371)
396595.TK90_0222				(PF02371)
396595.TK90_0228				(PF02371)
396595.TK90_1049				(PF02371)
396595.TK90_1410				(PF05706)
396595.TK90_1746				(PF01597)
396595.TK90_1244				(PF02635)
396595.TK90_0979				(PF03190)
396595.TK90_0971				(PF03625)
396595.TK90_0809				(PF02371)
396595.TK90_1707				(PF02371)
396595.TK90_1719				(PF01597)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================