Effective results for Bacillus pseudofirmus OF4 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 39 proteins (2 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
398511.BpOF4_04765				(PF02681)	ER
398511.BpOF4_04330				(PF02690)	ER
398511.BpOF4_13520				(PF02690)	ER
398511.BpOF4_13885				(PF02690)	ER
398511.BpOF4_10515				(PF13456)	mitochondrial; (mitochondrial)
398511.BpOF4_19060				(PF03851)	(mitochondrial)
398511.BpOF4_13175				(PF06695)	ER
398511.BpOF4_07850				(PF02272)	ER
398511.BpOF4_02720				(PF02690)	ER
398511.BpOF4_18835				(PF02681)	ER
398511.BpOF4_19175				(PF13456)	(mitochondrial)
398511.BpOF4_00240				PF02150	(plastid)
398511.BpOF4_04985				(PF00209)	(ER)
398511.BpOF4_13270				(PF14748)
398511.BpOF4_02125				PF08153
398511.BpOF4_11750				(PF02272)
398511.BpOF4_10465				(PF00209)
398511.BpOF4_17415				(PF00209)
398511.BpOF4_10255				(PF00209)
398511.BpOF4_10490				(PF02749)
398511.BpOF4_18650				(PF02272)
398511.BpOF4_03875				(PF02749)
398511.BpOF4_11800				(PF13921)
398511.BpOF4_00835				(PF03851)
398511.BpOF4_18665				(PF14748)
398511.BpOF4_02070				(PF02272)
398511.BpOF4_11865				(PF02272)
398511.BpOF4_14505				(PF13911)
398511.BpOF4_08835				(PF02272)
398511.BpOF4_00755				(PF13921)
398511.BpOF4_11720				(PF06695)
398511.BpOF4_16025				(PF13456)
398511.BpOF4_04245				(PF14328)
398511.BpOF4_16385				(PF12638)
398511.BpOF4_03430				(PF02272)
398511.BpOF4_14455				(PF14748)
398511.BpOF4_12060				(PF02749)
398511.BpOF4_11270				(PF00209)
398511.BpOF4_10645				(PF14748)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================