Effective results for Bacillus pseudofirmus OF4 (eggnog40)

Summary

Number of putative secreted proteins: 39
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 39 proteins (2 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
398511.BpOF4_04765(PF02681)ER
398511.BpOF4_04330(PF02690)ER
398511.BpOF4_13520(PF02690)ER
398511.BpOF4_13885(PF02690)ER
398511.BpOF4_10515(PF13456)mitochondrial; (mitochondrial)
398511.BpOF4_19060(PF03851)(mitochondrial)
398511.BpOF4_13175(PF06695)ER
398511.BpOF4_07850(PF02272)ER
398511.BpOF4_02720(PF02690)ER
398511.BpOF4_18835(PF02681)ER
398511.BpOF4_19175(PF13456)(mitochondrial)
398511.BpOF4_00240PF02150(plastid)
398511.BpOF4_04985(PF00209)(ER)
398511.BpOF4_13270(PF14748)
398511.BpOF4_02125PF08153
398511.BpOF4_11750(PF02272)
398511.BpOF4_10465(PF00209)
398511.BpOF4_17415(PF00209)
398511.BpOF4_10255(PF00209)
398511.BpOF4_10490(PF02749)
398511.BpOF4_18650(PF02272)
398511.BpOF4_03875(PF02749)
398511.BpOF4_11800(PF13921)
398511.BpOF4_00835(PF03851)
398511.BpOF4_18665(PF14748)
398511.BpOF4_02070(PF02272)
398511.BpOF4_11865(PF02272)
398511.BpOF4_14505(PF13911)
398511.BpOF4_08835(PF02272)
398511.BpOF4_00755(PF13921)
398511.BpOF4_11720(PF06695)
398511.BpOF4_16025(PF13456)
398511.BpOF4_04245(PF14328)
398511.BpOF4_16385(PF12638)
398511.BpOF4_03430(PF02272)
398511.BpOF4_14455(PF14748)
398511.BpOF4_12060(PF02749)
398511.BpOF4_11270(PF00209)
398511.BpOF4_10645(PF14748)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================