Effective results for Comamonas testosteroni KF-1 (eggnog40)
Summary
Number of putative secreted proteins: 182
- Predicted by T4SEpre: 109
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 88 proteins (35 high, 53 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 399795.CtesDRAFT_PD2377 | PF13276 (PF00665) | mitochondrial; (mitochondrial) | |||
| 399795.CtesDRAFT_PD2942 | PF13276 (PF00665) | mitochondrial | |||
| 399795.CtesDRAFT_PD2367 | PF13276 (PF00665) | (mitochondrial) | |||
| 399795.CtesDRAFT_PD1608 | (PF00665) PF13936 | (mitochondrial) | |||
| 399795.CtesDRAFT_PD0193 | + | ER | |||
| 399795.CtesDRAFT_PD3930 | + | ER | |||
| 399795.CtesDRAFT_PD3682 | + | ER | |||
| 399795.CtesDRAFT_PD1511 | + | ER | |||
| 399795.CtesDRAFT_PD2731 | (PF00665) | (mitochondrial) | |||
| 399795.CtesDRAFT_PD2005 | + | ER | |||
| 399795.CtesDRAFT_PD0500 | + | mitochondrial | |||
| 399795.CtesDRAFT_PD0699 | + | ER | |||
| 399795.CtesDRAFT_PD0692 | + | ER | |||
| 399795.CtesDRAFT_PD4831 | + | ER | |||
| 399795.CtesDRAFT_PD2259 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD2017 | (PF00665) | (ER) | |||
| 399795.CtesDRAFT_PD5423 | + | ER | |||
| 399795.CtesDRAFT_PD2747 | (PF13332) | mitochondrial; (mitochondrial) | |||
| 399795.CtesDRAFT_PD2740 | (PF00576) | ER | |||
| 399795.CtesDRAFT_PD0585 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD2113 | (PF00665) | (mitochondrial); mitochondrial | |||
| 399795.CtesDRAFT_PD4210 | + | ER | |||
| 399795.CtesDRAFT_PD4144 | (PF00576) | (ER) | |||
| 399795.CtesDRAFT_PD1316 | + | (ER) | |||
| 399795.CtesDRAFT_PD0863 | + | ER | |||
| 399795.CtesDRAFT_PD0867 | (PF00342) | mitochondrial; (mitochondrial) | |||
| 399795.CtesDRAFT_PD1029 | + | ER; (ER) | |||
| 399795.CtesDRAFT_PD2647 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD5342 | + | (ER); (mitochondrial) | |||
| 399795.CtesDRAFT_PD1794 | + | mitochondrial; (mitochondrial) | |||
| 399795.CtesDRAFT_PD4755 | + | mitochondrial | |||
| 399795.CtesDRAFT_PD1527 | (PF02201) | mitochondrial; plastid | |||
| 399795.CtesDRAFT_PD4520 | + | ER; (ER) | |||
| 399795.CtesDRAFT_PD4524 | + | (ER); ER | |||
| 399795.CtesDRAFT_PD0554 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD0145 | + | ER | |||
| 399795.CtesDRAFT_PD0882 | (PF13683) | (mitochondrial); (plastid) | |||
| 399795.CtesDRAFT_PD2489 | + | (ER) | |||
| 399795.CtesDRAFT_PD0165 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD4864 | + | ER | |||
| 399795.CtesDRAFT_PD2798 | + | (ER) | |||
| 399795.CtesDRAFT_PD0643 | + | ER | |||
| 399795.CtesDRAFT_PD5232 | + | ER; (ER) | |||
| 399795.CtesDRAFT_PD1994 | + | ER | |||
| 399795.CtesDRAFT_PD2140 | (PF00665) | mitochondrial | |||
| 399795.CtesDRAFT_PD0045 | + | ER | |||
| 399795.CtesDRAFT_PD1953 | + | ER | |||
| 399795.CtesDRAFT_PD4240 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD1621 | + | mitochondrial | |||
| 399795.CtesDRAFT_PD4209 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD2311 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD0816 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD2181 | PF13276 (PF13683) | ||||
| 399795.CtesDRAFT_PD2734 | PF13276 (PF13683) | ||||
| 399795.CtesDRAFT_PD2396 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD3294 | PF13276 (PF13683) | ||||
| 399795.CtesDRAFT_PD3505 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD2049 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD4427 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD3357 | PF13276 (PF13683) | ||||
| 399795.CtesDRAFT_PD0923 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD2742 | + | (PF13332) | |||
| 399795.CtesDRAFT_PD0057 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD4641 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD2411 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD1133 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD4214 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD5486 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD2097 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD2099 | PF13276 (PF13683) | ||||
| 399795.CtesDRAFT_PD2322 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD2400 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD3593 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD2360 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD2388 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD2383 | PF13276 (PF13683) | ||||
| 399795.CtesDRAFT_PD1777 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD2013 | PF13276 (PF00665) | ||||
| 399795.CtesDRAFT_PD2110 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD4089 | + | (mitochondrial) | |||
| 399795.CtesDRAFT_PD0022 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD1232 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD1060 | PF13276 (PF13683) | ||||
| 399795.CtesDRAFT_PD5085 | + | (ER) | |||
| 399795.CtesDRAFT_PD2146 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD3607 | (PF00665) PF13936 | ||||
| 399795.CtesDRAFT_PD5453 | + | ||||
| 399795.CtesDRAFT_PD1070 | (PF00076) | ||||
| 399795.CtesDRAFT_PD3277 | + | ||||
| 399795.CtesDRAFT_PD2691 | + | ||||
| 399795.CtesDRAFT_PD4208 | (PF01527) | ||||
| 399795.CtesDRAFT_PD4207 | (PF00665) | ||||
| 399795.CtesDRAFT_PD2316 | + | ||||
| 399795.CtesDRAFT_PD1108 | + | ||||
| 399795.CtesDRAFT_PD2410 | (PF01527) | ||||
| 399795.CtesDRAFT_PD5144 | (PF00665) | ||||
| 399795.CtesDRAFT_PD2458 | + | ||||
| 399795.CtesDRAFT_PD4760 | + | ||||
| 399795.CtesDRAFT_PD2659 | + | ||||
| 399795.CtesDRAFT_PD5354 | + | ||||
| 399795.CtesDRAFT_PD1728 | + | ||||
| 399795.CtesDRAFT_PD2182 | (PF01527) | ||||
| 399795.CtesDRAFT_PD2735 | (PF01527) | ||||
| 399795.CtesDRAFT_PD0548 | + | ||||
| 399795.CtesDRAFT_PD2395 | (PF01527) | ||||
| 399795.CtesDRAFT_PD1550 | (PF01176) | ||||
| 399795.CtesDRAFT_PD1873 | (PF00342) | ||||
| 399795.CtesDRAFT_PD2925 | + | ||||
| 399795.CtesDRAFT_PD3293 | (PF01527) | ||||
| 399795.CtesDRAFT_PD2027 | PF13276 | ||||
| 399795.CtesDRAFT_PD3884 | + | ||||
| 399795.CtesDRAFT_PD2042 | + | ||||
| 399795.CtesDRAFT_PD2880 | (PF00665) | ||||
| 399795.CtesDRAFT_PD0011 | + | ||||
| 399795.CtesDRAFT_PD0907 | + | ||||
| 399795.CtesDRAFT_PD3356 | (PF01527) | ||||
| 399795.CtesDRAFT_PD1840 | + | ||||
| 399795.CtesDRAFT_PD0922 | (PF01527) | ||||
| 399795.CtesDRAFT_PD2744 | (PF13332) | ||||
| 399795.CtesDRAFT_PD4355 | + | ||||
| 399795.CtesDRAFT_PD0948 | (PF00576) | ||||
| 399795.CtesDRAFT_PD2763 | + | ||||
| 399795.CtesDRAFT_PD1399 | + | ||||
| 399795.CtesDRAFT_PD2152 | (PF01176) | ||||
| 399795.CtesDRAFT_PD2153 | (PF00076) | ||||
| 399795.CtesDRAFT_PD4392 | (PF00342) | ||||
| 399795.CtesDRAFT_PD0395 | + | ||||
| 399795.CtesDRAFT_PD2139 | + | ||||
| 399795.CtesDRAFT_PD0400 | (PF08417) | ||||
| 399795.CtesDRAFT_PD4891 | + | ||||
| 399795.CtesDRAFT_PD1589 | + | ||||
| 399795.CtesDRAFT_PD2588 | + | ||||
| 399795.CtesDRAFT_PD3180 | (PF01176) | ||||
| 399795.CtesDRAFT_PD4615 | + | ||||
| 399795.CtesDRAFT_PD2323 | (PF01527) | ||||
| 399795.CtesDRAFT_PD4457 | + | ||||
| 399795.CtesDRAFT_PD4213 | (PF01527) | ||||
| 399795.CtesDRAFT_PD4666 | + | ||||
| 399795.CtesDRAFT_PD4667 | + | ||||
| 399795.CtesDRAFT_PD5133 | (PF00665) | ||||
| 399795.CtesDRAFT_PD0350 | + | ||||
| 399795.CtesDRAFT_PD2680 | (PF01527) | not used | |||
| 399795.CtesDRAFT_PD2096 | (PF01527) | ||||
| 399795.CtesDRAFT_PD2098 | (PF01527) | ||||
| 399795.CtesDRAFT_PD1679 | (PF05189) | ||||
| 399795.CtesDRAFT_PD4145 | (PF00576) | ||||
| 399795.CtesDRAFT_PD3203 | + | ||||
| 399795.CtesDRAFT_PD4969 | + | ||||
| 399795.CtesDRAFT_PD5175 | (PF00076) | ||||
| 399795.CtesDRAFT_PD5176 | (PF00076) | ||||
| 399795.CtesDRAFT_PD3438 | + | ||||
| 399795.CtesDRAFT_PD2401 | (PF01527) | ||||
| 399795.CtesDRAFT_PD4601 | + | ||||
| 399795.CtesDRAFT_PD1732 | (PF00665) | ||||
| 399795.CtesDRAFT_PD2361 | (PF01527) | ||||
| 399795.CtesDRAFT_PD3961 | + | ||||
| 399795.CtesDRAFT_PD2389 | (PF01527) | ||||
| 399795.CtesDRAFT_PD2382 | (PF01527) | ||||
| 399795.CtesDRAFT_PD2014 | (PF01527) | ||||
| 399795.CtesDRAFT_PD5099 | (PF02201) | ||||
| 399795.CtesDRAFT_PD1285 | + | ||||
| 399795.CtesDRAFT_PD3284 | + | ||||
| 399795.CtesDRAFT_PD1173 | + | ||||
| 399795.CtesDRAFT_PD2936 | + | ||||
| 399795.CtesDRAFT_PD2053 | (PF00665) | ||||
| 399795.CtesDRAFT_PD2050 | (PF01527) | ||||
| 399795.CtesDRAFT_PD2265 | + | ||||
| 399795.CtesDRAFT_PD3133 | + | ||||
| 399795.CtesDRAFT_PD1472 | + | ||||
| 399795.CtesDRAFT_PD2071 | + | ||||
| 399795.CtesDRAFT_PD0023 | PF13936 | ||||
| 399795.CtesDRAFT_PD4562 | + | ||||
| 399795.CtesDRAFT_PD2248 | + | ||||
| 399795.CtesDRAFT_PD5182 | + | ||||
| 399795.CtesDRAFT_PD1999 | + | ||||
| 399795.CtesDRAFT_PD1432 | + | ||||
| 399795.CtesDRAFT_PD1061 | (PF01527) | ||||
| 399795.CtesDRAFT_PD1066 | (PF00076) | ||||
| 399795.CtesDRAFT_PD3340 | + | ||||
| 399795.CtesDRAFT_PD3347 | + | ||||
| 399795.CtesDRAFT_PD1419 | + | ||||
| 399795.CtesDRAFT_PD3605 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.6 (6/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.0 (8/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.6 (6/10 KEGG proteins)
Estimated copy number = 1.0 (8/8 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
