Metamenu

Effective results for Bifidobacterium dentium Bd1 (eggnog40)

Summary

Number of putative secreted proteins: 50
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 50 proteins (0 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
401473.BDP_1676(PF14310) (PF01915)ER
401473.BDP_0511(PF14310) (PF01915)mitochondrial
401473.BDP_0220(PF14310) (PF01915)ER
401473.BDP_1999(PF05738)ER
401473.BDP_0277(PF05738)ER
401473.BDP_1875(PF05738)ER
401473.BDP_1286(PF06541)ER
401473.BDP_1287(PF06541)ER
401473.BDP_0200(PF05738)ER
401473.BDP_0643(PF05257)(ER)
401473.BDP_0535(PF05738)(ER)
401473.BDP_2059(PF05257)(ER)
401473.BDP_0291(PF06541)ER
401473.BDP_0983(PF05257)(ER)
401473.BDP_2008(PF05738)ER; (ER)
401473.BDP_0227(PF16874) (PF16875) (PF02065)
401473.BDP_0134(PF16874) (PF16875) (PF02065)
401473.BDP_2191(PF05738)ER; (mitochondrial)
401473.BDP_2229(PF16874) (PF16875) (PF02065)
401473.BDP_0487(PF16875) (PF02065)
401473.BDP_2253(PF14310) (PF01915)
401473.BDP_2254(PF14310) (PF01915)
401473.BDP_2259(PF14310) (PF01915)
401473.BDP_1671(PF14310) (PF01915)
401473.BDP_1657(PF14310) (PF01915)
401473.BDP_0198(PF05738)(plastid)
401473.BDP_2151(PF14310) (PF01915)
401473.BDP_2213(PF14310) (PF01915)
401473.BDP_0208(PF14310) (PF01915)
401473.BDP_1503(PF13518)
401473.BDP_1876(PF05738)
401473.BDP_1246(PF06414)
401473.BDP_1244(PF06941)
401473.BDP_0534(PF05738)
401473.BDP_1723(PF01915)
401473.BDP_1722(PF14310)
401473.BDP_0742(PF13518)
401473.BDP_1737(PF06414)
401473.BDP_2102(PF02065)
401473.BDP_0181(PF06541)
401473.BDP_1137(PF13518)
401473.BDP_1739(PF06941)
401473.BDP_0362(PF08354)
401473.BDP_0523(PF05257)
401473.BDP_1040(PF11969)
401473.BDP_0120(PF13518)
401473.BDP_2171(PF11175)
401473.BDP_2163(PF11175)
401473.BDP_0108(PF14336)
401473.BDP_1941(PF13518)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================