Metamenu

Effective results for Collinsella aerofaciens ATCC 25986 (eggnog40)

Summary

Number of putative secreted proteins: 98
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 98 proteins (3 high, 95 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411903.COLAER_00388(PF03577)(ER)
411903.COLAER_01110(PF00665)(mitochondrial)
411903.COLAER_01853(PF13518)(mitochondrial)
411903.COLAER_00666(PF13518)(mitochondrial)
411903.COLAER_01823(PF13518)(mitochondrial)
411903.COLAER_01831(PF13518)(mitochondrial)
411903.COLAER_00550(PF13518)(mitochondrial)
411903.COLAER_01405(PF13518)(mitochondrial)
411903.COLAER_00665(PF00665)(mitochondrial)
411903.COLAER_01822(PF00665)(mitochondrial)
411903.COLAER_01832(PF00665)(mitochondrial)
411903.COLAER_01495(PF00665)plastid
411903.COLAER_00551(PF00665)(mitochondrial)
411903.COLAER_01404(PF00665)(mitochondrial)
411903.COLAER_01416(PF14691)
411903.COLAER_01737(PF01695)
411903.COLAER_01739(PF00872)
411903.COLAER_01738(PF00665)
411903.COLAER_02298(PF00665)
411903.COLAER_02295(PF00872)
411903.COLAER_02297(PF01695)
411903.COLAER_01399(PF14691)
411903.COLAER_01264(PF14691)
411903.COLAER_00287(PF02371)
411903.COLAER_00927(PF13151)
411903.COLAER_01460(PF03577)
411903.COLAER_00639(PF00872)
411903.COLAER_02288(PF00665)
411903.COLAER_01074(PF02371)
411903.COLAER_01278PF10712
411903.COLAER_01485(PF00665)
411903.COLAER_02382(PF00665)
411903.COLAER_02381(PF01695)
411903.COLAER_02380(PF02371)
411903.COLAER_00864(PF03577)
411903.COLAER_01845(PF13518)
411903.COLAER_01298(PF00665)
411903.COLAER_01299(PF01695)
411903.COLAER_02243(PF02371)
411903.COLAER_00872(PF02371)
411903.COLAER_01876(PF14691)
411903.COLAER_02014(PF00872)
411903.COLAER_02013(PF02371)
411903.COLAER_02123(PF00872)not used
411903.COLAER_01117(PF14691)
411903.COLAER_01847(PF02371)
411903.COLAER_00850(PF02371)
411903.COLAER_00667(PF02371)
411903.COLAER_00687(PF01695)
411903.COLAER_01004(PF00872)
411903.COLAER_01311(PF00665)
411903.COLAER_01310(PF01695)
411903.COLAER_01829(PF01695)
411903.COLAER_01828(PF00665)
411903.COLAER_01109(PF13518)
411903.COLAER_01957(PF02873)
411903.COLAER_01486(PF01695)
411903.COLAER_01481(PF02371)
411903.COLAER_01480(PF02371)not used
411903.COLAER_00334(PF02873)
411903.COLAER_02029(PF00665)
411903.COLAER_02026(PF00665)
411903.COLAER_02027(PF01695)
411903.COLAER_02206(PF00665)
411903.COLAER_02205(PF02371)
411903.COLAER_01306(PF00872)
411903.COLAER_01305(PF01695)not used
411903.COLAER_02379(PF02371)
411903.COLAER_00836(PF01969)
411903.COLAER_02413PF12873
411903.COLAER_02412(PF01695)
411903.COLAER_02419(PF00872)
411903.COLAER_01808(PF00872)
411903.COLAER_01979(PF01969)
411903.COLAER_00319(PF00872)
411903.COLAER_00149(PF01695)
411903.COLAER_00148(PF00872)
411903.COLAER_00563(PF01695)
411903.COLAER_00565(PF02371)
411903.COLAER_00564(PF00665)
411903.COLAER_02319(PF00665)
411903.COLAER_02316(PF01695)
411903.COLAER_00812(PF14691)
411903.COLAER_00964(PF00665)
411903.COLAER_00961(PF01695)
411903.COLAER_00962(PF01695)
411903.COLAER_00159(PF05704)
411903.COLAER_00150(PF00665)
411903.COLAER_00776(PF00872)
411903.COLAER_02320(PF02371)
411903.COLAER_02437(PF01695)
411903.COLAER_00377(PF00872)
411903.COLAER_00371(PF00665)
411903.COLAER_02425PF12873
411903.COLAER_01508(PF00872)
411903.COLAER_00171(PF00872)
411903.COLAER_01749(PF00872)
411903.COLAER_00437(PF02371)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================