Metamenu

Effective results for Lactococcus lactis subsp. cremoris MG1363 (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 96 proteins (23 high, 73 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
416870.llmg_1265PF13276 (PF00665)(mitochondrial)
416870.llmg_0611(PF13518)(mitochondrial)
416870.llmg_1653(PF05257)(mitochondrial); (plastid)
416870.llmg_1654PF13276 (PF00665)(mitochondrial)
416870.llmg_1713PF13276 (PF00665)(mitochondrial)
416870.llmg_0654(PF00665)(mitochondrial)
416870.llmg_0721PF13276 (PF00665)(mitochondrial)
416870.llmg_0647PF13276 (PF00665)(mitochondrial)
416870.llmg_1513(PF03960)mitochondrial
416870.llmg_0927(PF03959)ER
416870.llmg_2507(PF05257)ER
416870.llmg_0904(PF05257)ER
416870.llmg_0901PF13276 (PF00665)(mitochondrial)
416870.llmg_1367PF13276 (PF00665)(mitochondrial)
416870.llmg_0684PF13276 (PF00665)(mitochondrial)
416870.llmg_1083(PF06736)ER; (ER)
416870.llmg_0549PF13276 (PF00665)(mitochondrial)
416870.llmg_1437PF13276 (PF00665)(mitochondrial)
416870.llmg_1233PF13276 (PF00665)(mitochondrial)
416870.llmg_0153(PF06736)ER
416870.llmg_1840PF13276 (PF00665)(mitochondrial)
416870.llmg_1144PF13276 (PF00665)(mitochondrial)
416870.llmg_1684(PF06736)ER; (ER)
416870.llmg_0621PF13276 (PF00665)(mitochondrial)
416870.llmg_0613PF13276 (PF00665)
416870.llmg_0983(PF01527) (PF13518)
416870.llmg_2041(PF06736)(mitochondrial)
416870.llmg_1073PF13276 (PF00665)
416870.llmg_1716PF13276 (PF00665)
416870.llmg_0714PF13276 (PF00665)
416870.llmg_0652PF13276 (PF00665)
416870.llmg_1703(PF03960)(mitochondrial)
416870.llmg_0122PF13276 (PF00665)
416870.llmg_0640(PF03960)(mitochondrial)
416870.llmg_0116(PF06736)(mitochondrial)
416870.llmg_1566(PF01527) (PF13518)
416870.llmg_1565PF13276 (PF00665)
416870.llmg_1893PF13276 (PF00665)
416870.llmg_1231(PF01527) (PF13518)
416870.llmg_1155(PF03960)(mitochondrial)
416870.llmg_2174PF13276 (PF00665)
416870.llmg_1264(PF01527)
416870.llmg_1261(PF01695)
416870.llmg_1262(PF00665)
416870.llmg_0612(PF01527)
416870.llmg_2109(PF01695)
416870.llmg_0981(PF01527)
416870.llmg_0050(PF01695)
416870.llmg_1275(PF03306)
416870.llmg_0514(PF03960)
416870.llmg_2110(PF00665)
416870.llmg_1808(PF01695)
416870.llmg_1801(PF13151)
416870.llmg_0049(PF00665)
416870.llmg_1071(PF13518)
416870.llmg_1072(PF01527)
416870.llmg_1075(PF00665)
416870.llmg_1074(PF01695)
416870.llmg_0678(PF01527)
416870.llmg_2128(PF04098)
416870.llmg_1655(PF01527)
416870.llmg_1714(PF01527)
416870.llmg_1715(PF01527)
416870.llmg_1390(PF05257)
416870.llmg_0653(PF01527)not used
416870.llmg_0655(PF01527)
416870.llmg_0720(PF01527)
416870.llmg_0121(PF01527)
416870.llmg_0648(PF01527)
416870.llmg_1611(PF00665)
416870.llmg_1612(PF01695)
416870.llmg_0808(PF01695)
416870.llmg_1975(PF13518)
416870.llmg_1564(PF01527)
416870.llmg_0900(PF01527)
416870.llmg_1962(PF05495)
416870.llmg_1368(PF01527)
416870.llmg_0683(PF01695)
416870.llmg_0682(PF00665)
416870.llmg_0823(PF01695)
416870.llmg_0822(PF00665)
416870.llmg_1768(PF03960)
416870.llmg_1438(PF01527)
416870.llmg_1890(PF05257)
416870.llmg_1232(PF01527)
416870.llmg_1234(PF01527)
416870.llmg_0550(PF01527)
416870.llmg_0622(PF01527)
416870.llmg_1841(PF01527)
416870.llmg_1145(PF01527)
416870.llmg_2165(PF05257)
416870.llmg_1130(PF03960)
416870.llmg_2173(PF01527)
416870.llmg_2175(PF13518)
416870.llmg_1464(PF03306)
416870.llmg_0088(PF13518)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================