Metamenu

Effective results for Methylobacterium extorquens PA1 (eggnog40)

Summary

Number of putative secreted proteins: 177
- Predicted by T4SEpre: 92
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 102 proteins (1 high, 101 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
419610.Mext_1591+(PF13704)(ER)
419610.Mext_2032(PF08447)ER
419610.Mext_2327+(ER)
419610.Mext_3020(PF01774)mitochondrial
419610.Mext_1113+ER
419610.Mext_1112PF00068ER
419610.Mext_0245(PF13524)ER
419610.Mext_4769+mitochondrial
419610.Mext_2657+ER
419610.Mext_0334+ER
419610.Mext_3785+ER; (ER)
419610.Mext_3655+ER
419610.Mext_3225(PF13641)mitochondrial
419610.Mext_3641(PF13641)ER
419610.Mext_0919+ER
419610.Mext_0893+ER
419610.Mext_2937+ER
419610.Mext_2211+ER
419610.Mext_3111+mitochondrial
419610.Mext_1248+(mitochondrial)
419610.Mext_3808+ER
419610.Mext_0341+ER; (ER)
419610.Mext_0116+mitochondrial; (mitochondrial)
419610.Mext_4054+ER
419610.Mext_4875(PF08447)ER
419610.Mext_0574+ER
419610.Mext_4067+ER
419610.Mext_3265+(mitochondrial); (ER)
419610.Mext_2058+(ER)
419610.Mext_1193(PF10908)ER
419610.Mext_1605+mitochondrial
419610.Mext_4811(PF03209)ER
419610.Mext_1164(PF13641)ER
419610.Mext_3156(PF11911)ER
419610.Mext_4821(PF03209)(mitochondrial)
419610.Mext_0543(PF08447)(mitochondrial)
419610.Mext_1379+ER
419610.Mext_1371+ER
419610.Mext_1373(PF13524)mitochondrial
419610.Mext_3434(PF13641)ER
419610.Mext_3381+(ER)
419610.Mext_1405+ER
419610.Mext_1810+(ER)
419610.Mext_2380+(mitochondrial)
419610.Mext_2383(PF08447)(mitochondrial)
419610.Mext_3177+(ER); ER
419610.Mext_0872+ER
419610.Mext_2333+ER
419610.Mext_0505(PF13524)ER; (ER)
419610.Mext_0506(PF13524)(mitochondrial)
419610.Mext_2751+(mitochondrial)
419610.Mext_2022(PF08447)mitochondrial
419610.Mext_1210(PF07250)(ER)
419610.Mext_0246(PF13524)(mitochondrial)
419610.Mext_0247(PF13524)(mitochondrial)
419610.Mext_0845(PF13641)(mitochondrial)
419610.Mext_3014(PF01730)(plastid)
419610.Mext_0383+(ER)
419610.Mext_2779+(mitochondrial)
419610.Mext_4391+(mitochondrial)
419610.Mext_3695(PF13704)
419610.Mext_4369(PF12200)
419610.Mext_1441+
419610.Mext_4770+
419610.Mext_2103(PF08447)
419610.Mext_1455(PF08447)
419610.Mext_1672(PF08447)
419610.Mext_1117(PF08447)
419610.Mext_4887(PF05706)
419610.Mext_1203(PF10908)
419610.Mext_3684(PF13524)
419610.Mext_3683(PF13524)
419610.Mext_2792+
419610.Mext_0243(PF01658)
419610.Mext_0436(PF08447)
419610.Mext_3528(PF08447)
419610.Mext_2130+
419610.Mext_2136(PF05532)
419610.Mext_2007+
419610.Mext_0934+
419610.Mext_4542(PF08447)
419610.Mext_2310+
419610.Mext_3300(PF08447)
419610.Mext_3301(PF13641)
419610.Mext_0798(PF08447)
419610.Mext_2495(PF05532)
419610.Mext_1301(PF01774)
419610.Mext_1303(PF01730)
419610.Mext_3531(PF13683)
419610.Mext_2303+
419610.Mext_1782(PF08447)
419610.Mext_2662+
419610.Mext_2664+
419610.Mext_3826(PF08447)
419610.Mext_1883(PF12200)not used
419610.Mext_1881(PF08447)
419610.Mext_0136(PF08447)
419610.Mext_0915(PF08447)
419610.Mext_0437(PF08447)
419610.Mext_2512+
419610.Mext_2679(PF01658)
419610.Mext_3817+
419610.Mext_4859(PF08447)
419610.Mext_0358(PF11721)
419610.Mext_2696+
419610.Mext_4217(PF08447)
419610.Mext_3676(PF13683)not used
419610.Mext_0123(PF08447)
419610.Mext_0120+
419610.Mext_4468(PF01442)
419610.Mext_3063(PF08447)
419610.Mext_3119+
419610.Mext_0972+
419610.Mext_0201(PF13641)
419610.Mext_4260(PF13641)
419610.Mext_4124(PF11721)
419610.Mext_0802(PF08447)
419610.Mext_4472+
419610.Mext_2223+
419610.Mext_4476+
419610.Mext_4877(PF08447)
419610.Mext_0107(PF13683)
419610.Mext_0108(PF08447)
419610.Mext_0811(PF12513)
419610.Mext_0581+
419610.Mext_2426(PF11721)
419610.Mext_0364(PF05532)
419610.Mext_0367(PF05532)
419610.Mext_0366(PF05532)
419610.Mext_1195(PF01730)
419610.Mext_1190(PF08447)
419610.Mext_1199(PF01774)
419610.Mext_0857+
419610.Mext_2953(PF13704)
419610.Mext_4878(PF08447)
419610.Mext_4259(PF08447)
419610.Mext_0386+
419610.Mext_1870+
419610.Mext_1949(PF13641)
419610.Mext_0018(PF08447)
419610.Mext_4535+
419610.Mext_0499(PF13704)
419610.Mext_2712(PF14701)
419610.Mext_0151(PF13683)
419610.Mext_2978+
419610.Mext_1953+
419610.Mext_1955+
419610.Mext_2379+
419610.Mext_4831+
419610.Mext_0535(PF13683)
419610.Mext_0440+
419610.Mext_0443(PF13683)
419610.Mext_3897(PF08447)
419610.Mext_4609(PF13704)
419610.Mext_4517(PF13704)
419610.Mext_0633+
419610.Mext_3187+
419610.Mext_4729(PF05532)
419610.Mext_2178+
419610.Mext_1557(PF11911)
419610.Mext_4505(PF08447)
419610.Mext_0731(PF08447)
419610.Mext_1126+
419610.Mext_4828+
419610.Mext_4410+
419610.Mext_1901(PF13683)
419610.Mext_0875(PF08447)
419610.Mext_1581(PF08447)
419610.Mext_0507(PF13524)
419610.Mext_0503(PF01658)
419610.Mext_1059(PF10013)not used
419610.Mext_1133(PF13641)
419610.Mext_0474+
419610.Mext_0269+
419610.Mext_1826+
419610.Mext_3507(PF08447)
419610.Mext_0663+

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================