Effective results for Geobacillus thermodenitrificans NG80-2 (eggnog40)

Summary

Number of putative secreted proteins: 23
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 23 proteins (0 high, 23 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
420246.GTNG_1245				(PF01610)	mitochondrial
420246.GTNG_0785				(PF01610)	mitochondrial
420246.GTNG_2649				(PF02675)	(mitochondrial); mitochondrial
420246.GTNG_3180				(PF01610)	mitochondrial
420246.GTNG_2066				(PF01610)	mitochondrial
420246.GTNG_3179				(PF05684)	ER
420246.GTNG_0232				(PF01610)	mitochondrial
420246.GTNG_1193				(PF01610)	mitochondrial
420246.GTNG_1242				(PF05684)
420246.GTNG_1253				(PF02675)
420246.GTNG_0314				(PF01610)
420246.GTNG_0325				(PF13151)
420246.GTNG_3203				(PF08950)
420246.GTNG_3197				(PF08950)
420246.GTNG_1584				(PF01610)
420246.GTNG_2844				(PF08761)
420246.GTNG_0146				(PF01610)
420246.GTNG_2048				(PF01610)
420246.GTNG_0972				(PF13921)
420246.GTNG_2638				(PF08761)
420246.GTNG_1548				(PF02675)
420246.GTNG_2761				(PF12606)
420246.GTNG_2501				(PF13921)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================