Effective results for Lactococcus garvieae Lg2 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 4 eukaryotic-like domains, contained in 26 proteins (9 high, 17 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
420890.LCGL_1663				PF05257	(mitochondrial)
420890.LCGL_1238				(PF03960)	mitochondrial; (mitochondrial)
420890.LCGL_1366				(PF03960)	(mitochondrial)
420890.LCGL_0960				(PF03960)	(mitochondrial)
420890.LCGL_1929				PF05257	ER
420890.LCGL_1930				PF05257	ER
420890.LCGL_1401				PF05257	ER
420890.LCGL_1091				(PF07517)	(mitochondrial)
420890.LCGL_0679				PF05257	ER
420890.LCGL_1269				(PF03960)	(mitochondrial)
420890.LCGL_0581				(PF03960)	(mitochondrial)
420890.LCGL_0364				(PF03960)	(mitochondrial)
420890.LCGL_1441				(PF03960)
420890.LCGL_0841				(PF03306)
420890.LCGL_0335				(PF03960)
420890.LCGL_1068				(PF03306)
420890.LCGL_1369				PF05257
420890.LCGL_0544				(PF03960)
420890.LCGL_1103				PF05257
420890.LCGL_1438				(PF03960)
420890.LCGL_1113				PF05257
420890.LCGL_0062				(PF07517)
420890.LCGL_0423				(PF03960)
420890.LCGL_0861				(PF03960)
420890.LCGL_1090				(PF07517)
420890.LCGL_0878				PF05257

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================