Metamenu

Effective results for Shewanella sediminis HAW-EB3 (eggnog40)

Summary

Number of putative secreted proteins: 80
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 80 proteins (3 high, 77 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
425104.Ssed_4047(PF04879) (PF01568)mitochondrial
425104.Ssed_2799(PF04879) (PF01568)mitochondrial; (mitochondrial)
425104.Ssed_0359(PF04879) (PF01568)(ER)
425104.Ssed_2923(PF04879) (PF01568)(mitochondrial)
425104.Ssed_0663(PF14864) (PF14863)ER
425104.Ssed_1307(PF04879) (PF01568)(mitochondrial)
425104.Ssed_0229(PF04879) (PF01568)(mitochondrial)
425104.Ssed_3184(PF14864) (PF14863)ER
425104.Ssed_0702(PF14864) (PF14863)ER
425104.Ssed_0350(PF04879) (PF01568)(mitochondrial)
425104.Ssed_3936(PF00849)(mitochondrial); plastid
425104.Ssed_1098(PF00245)(ER)
425104.Ssed_1774(PF00755)(mitochondrial)
425104.Ssed_0484(PF01346)ER
425104.Ssed_0796(PF01715)(mitochondrial)
425104.Ssed_0495(PF01346)ER
425104.Ssed_1029(PF01346)ER
425104.Ssed_4001(PF05935)ER; (ER)
425104.Ssed_2232(PF13436)ER
425104.Ssed_1813(PF05023)ER
425104.Ssed_1250(PF00245)ER
425104.Ssed_2800(PF03974)(mitochondrial)
425104.Ssed_0237(PF05935)ER
425104.Ssed_3507(PF00849)ER
425104.Ssed_1249(PF00245)ER
425104.Ssed_3974(PF00245)ER
425104.Ssed_3567(PF00026)(mitochondrial); mitochondrial
425104.Ssed_1913(PF04879) (PF01568)(ER)
425104.Ssed_0918(PF01346)ER
425104.Ssed_0838(PF04879) (PF01568)
425104.Ssed_3597(PF03199) (PF03917)
425104.Ssed_2074(PF03974)(mitochondrial)
425104.Ssed_1404(PF04879) (PF01568)
425104.Ssed_3636(PF04879) (PF01568)
425104.Ssed_0996(PF00849)(mitochondrial)
425104.Ssed_3982(PF01568)(mitochondrial)
425104.Ssed_4211(PF04879) (PF01568)
425104.Ssed_4421(PF04879) (PF01568)
425104.Ssed_3957(PF04879) (PF01568)
425104.Ssed_4417(PF04879) (PF01568)
425104.Ssed_1169(PF02482)
425104.Ssed_4061(PF16983)
425104.Ssed_2504(PF01048)
425104.Ssed_1882(PF00849)
425104.Ssed_1954(PF01568)
425104.Ssed_3658(PF01048)
425104.Ssed_4073(PF00849)
425104.Ssed_1346(PF02482)
425104.Ssed_2896(PF00849)
425104.Ssed_1995(PF01048)
425104.Ssed_1359PF06467
425104.Ssed_3681(PF01048)
425104.Ssed_3682(PF01048)
425104.Ssed_4121(PF01346)
425104.Ssed_1691(PF00849)
425104.Ssed_3654(PF01048)
425104.Ssed_3271(PF01048)
425104.Ssed_2250(PF00849)
425104.Ssed_3896PF10469
425104.Ssed_1515(PF00849)
425104.Ssed_0461(PF01048)
425104.Ssed_0843(PF00849)
425104.Ssed_3265(PF00849)
425104.Ssed_3406(PF01346)
425104.Ssed_2572(PF02482)
425104.Ssed_4208(PF01568)
425104.Ssed_3612(PF01048)
425104.Ssed_3611(PF01715)
425104.Ssed_1115(PF01048)
425104.Ssed_0725(PF02482)
425104.Ssed_3169(PF00849)
425104.Ssed_3360(PF01568)
425104.Ssed_0374(PF02732)
425104.Ssed_3375(PF01048)
425104.Ssed_1925(PF01048)
425104.Ssed_3499(PF00849)
425104.Ssed_4390(PF00849)
425104.Ssed_2633(PF00849)
425104.Ssed_2608PF01536
425104.Ssed_0821(PF00849)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 1.0 (8/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================