Effective results for Staphylococcus hominis subsp. hominis C80 (eggnog40)

Summary

Number of putative secreted proteins: 21
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 21 proteins (9 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
435837.HMPREF0798_01368				(PF11070)	ER
435837.HMPREF0798_00557				PF05257	ER
435837.HMPREF0798_00942				PF05257	ER
435837.HMPREF0798_01521				(PF00344)	(mitochondrial)
435837.HMPREF0798_00681				(PF05154)	ER
435837.HMPREF0798_01230				PF05257	ER
435837.HMPREF0798_01783				(PF03596)	ER
435837.HMPREF0798_00539				(PF05154)	ER
435837.HMPREF0798_01751				(PF03596)	ER
435837.HMPREF0798_01464				PF05257	(ER)
435837.HMPREF0798_00862				PF05257	(ER)
435837.HMPREF0798_01115				PF05257	(plastid)
435837.HMPREF0798_01578				PF05257	(ER)
435837.HMPREF0798_01992				(PF03630)
435837.HMPREF0798_01662				(PF13910)
435837.HMPREF0798_01461				PF05257
435837.HMPREF0798_01096				(PF00344)
435837.HMPREF0798_01793				(PF05154)
435837.HMPREF0798_00880				(PF05495)
435837.HMPREF0798_02078				(PF05154)
435837.HMPREF0798_01167				PF05257

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================