Effective results for Staphylococcus capitis C87 (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 9 eukaryotic-like domains, contained in 26 proteins (11 high, 15 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
435838.HMPREF0786_01299				PF05257	ER
435838.HMPREF0786_02032				PF05257	ER; (ER)
435838.HMPREF0786_01144				PF11070	ER
435838.HMPREF0786_01463				PF05257	ER
435838.HMPREF0786_00980				(PF00344)	(mitochondrial)
435838.HMPREF0786_01053				PF05257	(mitochondrial)
435838.HMPREF0786_01642				PF11070	ER
435838.HMPREF0786_01494				(PF00344)	ER
435838.HMPREF0786_01943				PF05257	(mitochondrial)
435838.HMPREF0786_01049				PF05257	(ER)
435838.HMPREF0786_01128				(PF06039)	(ER)
435838.HMPREF0786_01373				(PF06039)
435838.HMPREF0786_01575				(PF00185)
435838.HMPREF0786_01876				(PF00185)
435838.HMPREF0786_01434				(PF00185)
435838.HMPREF0786_01433				(PF00185)
435838.HMPREF0786_02013				(PF05495)
435838.HMPREF0786_01458				(PF00185)
435838.HMPREF0786_01598				(PF03059)
435838.HMPREF0786_01803				PF05257
435838.HMPREF0786_02345				(PF03630)
435838.HMPREF0786_00851				PF05257
435838.HMPREF0786_00677				(PF09419)
435838.HMPREF0786_00281				(PF00185)
435838.HMPREF0786_01391				PF05257
435838.HMPREF0786_01530				(PF06039)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================