Effective results for Acinetobacter oleivorans DR1 (eggnog40)

Summary

Number of putative secreted proteins: 13
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 5 eukaryotic-like domains, contained in 13 proteins (1 high, 12 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
436717.AOLE_06945(PF13582)ER
436717.AOLE_02600(PF14539)(mitochondrial)
436717.AOLE_17975(PF14539)(mitochondrial)
436717.AOLE_18655(PF14497)(mitochondrial); mitochondrial
436717.AOLE_00315(PF14497)mitochondrial
436717.AOLE_11225(PF14497)(mitochondrial)
436717.AOLE_17410(PF14497)
436717.AOLE_06170(PF14497)
436717.AOLE_05845(PF11815)
436717.AOLE_04865(PF14539)
436717.AOLE_06785(PF14539)
436717.AOLE_07870PF15711
436717.AOLE_06730(PF14497)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.625 (5/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================