Effective results for Azorhizobium caulinodans ORS 571 (eggnog40)
Summary
Number of putative secreted proteins: 141
- Predicted by T4SEpre: 97
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 53 proteins (1 high, 52 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV, Type VI
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 438753.AZC_2690 | + | mitochondrial | |||
| 438753.AZC_2570 | + | ER | |||
| 438753.AZC_2573 | + | ER | |||
| 438753.AZC_3312 | (PF01425) | (mitochondrial); mitochondrial | |||
| 438753.AZC_3889 | + | (ER) | |||
| 438753.AZC_4443 | + | ER | |||
| 438753.AZC_4524 | + | (ER) | |||
| 438753.AZC_3547 | + | mitochondrial; (mitochondrial) | |||
| 438753.AZC_2377 | + | mitochondrial; ER | |||
| 438753.AZC_1201 | + | (mitochondrial) | |||
| 438753.AZC_0155 | + | ER | |||
| 438753.AZC_1979 | + | ER; mitochondrial | |||
| 438753.AZC_0492 | + | mitochondrial | |||
| 438753.AZC_0017 | + | (mitochondrial) | |||
| 438753.AZC_0168 | (PF01968) (PF02538) (PF05378) | ||||
| 438753.AZC_0167 | (PF00839) | mitochondrial | |||
| 438753.AZC_0821 | + | mitochondrial | |||
| 438753.AZC_3138 | + | ER | |||
| 438753.AZC_2401 | (PF13787) | ER | |||
| 438753.AZC_4244 | + | mitochondrial | |||
| 438753.AZC_3468 | (PF05050) | mitochondrial | |||
| 438753.AZC_0564 | + | ER | |||
| 438753.AZC_0365 | + | mitochondrial | |||
| 438753.AZC_0779 | (PF00839) | (mitochondrial) | |||
| 438753.AZC_1519 | (PF05711) | mitochondrial | |||
| 438753.AZC_2297 | + | (mitochondrial) | |||
| 438753.AZC_4633 | (PF03901) | (mitochondrial); (plastid) | |||
| 438753.AZC_3265 | + | (mitochondrial) | |||
| 438753.AZC_0724 | + | ER | |||
| 438753.AZC_2827 | + | ER | |||
| 438753.AZC_3529 | (PF08881) | (mitochondrial) | |||
| 438753.AZC_2514 | + | ER | |||
| 438753.AZC_1564 | + | (mitochondrial) | |||
| 438753.AZC_0062 | + | ER; (ER) | |||
| 438753.AZC_3387 | + | (mitochondrial) | |||
| 438753.AZC_4126 | + | (mitochondrial) | |||
| 438753.AZC_1086 | + | mitochondrial | |||
| 438753.AZC_2699 | + | (mitochondrial); plastid | |||
| 438753.AZC_3379 | + | (mitochondrial); plastid | |||
| 438753.AZC_4195 | (PF13787) | ER; (ER) | |||
| 438753.AZC_3607 | PF14700 (PF00940) | ||||
| 438753.AZC_2355 | (PF01968) (PF05378) | ||||
| 438753.AZC_3793 | + | (plastid) | |||
| 438753.AZC_1797 | (PF01968) (PF05378) | ||||
| 438753.AZC_1300 | + | (plastid) | |||
| 438753.AZC_2634 | (PF01425) | (plastid) | |||
| 438753.AZC_2633 | (PF01425) | plastid | |||
| 438753.AZC_0556 | + | (mitochondrial) | |||
| 438753.AZC_1190 | (PF05050) | (mitochondrial) | |||
| 438753.AZC_0100 | + | (mitochondrial) | |||
| 438753.AZC_1247 | + | (mitochondrial) | |||
| 438753.AZC_2728 | (PF01968) (PF05378) | ||||
| 438753.AZC_0196 | + | (ER) | |||
| 438753.AZC_3039 | (PF01968) (PF05378) | ||||
| 438753.AZC_4419 | (PF05050) | (mitochondrial) | |||
| 438753.AZC_2923 | (PF01968) (PF05378) | ||||
| 438753.AZC_4187 | (PF01425) | (plastid) | |||
| 438753.AZC_2117 | (PF01968) (PF05378) | ||||
| 438753.AZC_1059 | (PF01425) | ||||
| 438753.AZC_2218 | (PF01442) | ||||
| 438753.AZC_2589 | + | ||||
| 438753.AZC_2564 | + | ||||
| 438753.AZC_0275 | + | ||||
| 438753.AZC_4037 | + | ||||
| 438753.AZC_4033 | + | ||||
| 438753.AZC_4087 | + | ||||
| 438753.AZC_1934 | + | ||||
| 438753.AZC_2591 | + | ||||
| 438753.AZC_2354 | (PF02538) | ||||
| 438753.AZC_2578 | (PF01425) | ||||
| 438753.AZC_3175 | + | ||||
| 438753.AZC_2828 | + | ||||
| 438753.AZC_0043 | (PF05050) | ||||
| 438753.AZC_2919 | (PF05050) | ||||
| 438753.AZC_2911 | + | ||||
| 438753.AZC_3306 | + | ||||
| 438753.AZC_3764 | + | ||||
| 438753.AZC_4527 | + | ||||
| 438753.AZC_0896 | + | ||||
| 438753.AZC_0208 | + | ||||
| 438753.AZC_2552 | + | ||||
| 438753.AZC_1796 | (PF02538) | ||||
| 438753.AZC_1550 | (PF01425) | ||||
| 438753.AZC_1559 | + | ||||
| 438753.AZC_3204 | (PF01425) | ||||
| 438753.AZC_2632 | (PF01425) | ||||
| 438753.AZC_3411 | + | ||||
| 438753.AZC_0923 | + | ||||
| 438753.AZC_4495 | + | ||||
| 438753.AZC_4497 | + | ||||
| 438753.AZC_2948 | (PF05686) | ||||
| 438753.AZC_3481 | + | ||||
| 438753.AZC_3480 | + | ||||
| 438753.AZC_1973 | (PF01425) | ||||
| 438753.AZC_1992 | + | ||||
| 438753.AZC_2082 | + | ||||
| 438753.AZC_2531 | + | ||||
| 438753.AZC_2624 | (PF01425) | ||||
| 438753.AZC_2623 | (PF01425) | ||||
| 438753.AZC_3040 | (PF02538) | ||||
| 438753.AZC_3467 | (PF05050) | ||||
| 438753.AZC_1197 | + | ||||
| 438753.AZC_1523 | (PF01425) | ||||
| 438753.AZC_1352 | + | ||||
| 438753.AZC_0977 | (PF02689) | ||||
| 438753.AZC_2429 | + | ||||
| 438753.AZC_2042 | (PF01425) | ||||
| 438753.AZC_1515 | (PF01425) | ||||
| 438753.AZC_1423 | + | ||||
| 438753.AZC_0110 | + | ||||
| 438753.AZC_4043 | + | ||||
| 438753.AZC_3071 | + | ||||
| 438753.AZC_3259 | + | ||||
| 438753.AZC_4141 | + | ||||
| 438753.AZC_1246 | + | ||||
| 438753.AZC_3811 | (PF05830) | ||||
| 438753.AZC_3004 | (PF05050) | ||||
| 438753.AZC_4152 | + | ||||
| 438753.AZC_2844 | (PF01425) | ||||
| 438753.AZC_0721 | (PF01425) | ||||
| 438753.AZC_4164 | + | ||||
| 438753.AZC_3826 | + | ||||
| 438753.AZC_1890 | (PF05711) | ||||
| 438753.AZC_2499 | (PF01425) | ||||
| 438753.AZC_2010 | + | ||||
| 438753.AZC_4430 | (PF01425) | ||||
| 438753.AZC_2658 | + | ||||
| 438753.AZC_3836 | + | ||||
| 438753.AZC_2139 | + | ||||
| 438753.AZC_1469 | + | ||||
| 438753.AZC_2815 | + | ||||
| 438753.AZC_0753 | + | ||||
| 438753.AZC_3589 | + | ||||
| 438753.AZC_3581 | + | ||||
| 438753.AZC_2922 | (PF02538) | ||||
| 438753.AZC_2693 | (PF01425) | ||||
| 438753.AZC_2020 | (PF01425) | ||||
| 438753.AZC_2116 | (PF02538) | ||||
| 438753.AZC_0666 | + | ||||
| 438753.AZC_0667 | + | ||||
| 438753.AZC_3281 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.6 (6/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 1.5 (12/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.6 (6/10 KEGG proteins)
Estimated copy number = 1.5 (12/8 KEGG proteins)
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- +43 1 4277 876681
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