Effective results for Ruegeria sp. R11 (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 36 proteins (1 high, 35 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
439497.RR11_142(PF16350) (PF08669)ER; (ER)
439497.RR11_1052(PF16350) (PF08669)(ER)
439497.RR11_2615(PF16350) (PF08669)ER
439497.RR11_3440(PF08669)(mitochondrial)
439497.RR11_2179(PF13704)(mitochondrial)
439497.RR11_1101(PF16350) (PF08669)
439497.RR11_2998(PF16350) (PF08669)
439497.RR11_3173(PF02485)(plastid)
439497.RR11_2177(PF16350) (PF08669)
439497.RR11_1645(PF07366)
439497.RR11_80(PF08669)
439497.RR11_3082(PF07366)
439497.RR11_1644(PF08669)
439497.RR11_3389(PF08669)
439497.RR11_3060(PF07366)
439497.RR11_770(PF07366)
439497.RR11_2394(PF08669)
439497.RR11_3271(PF08669)
439497.RR11_1729(PF10013)not used
439497.RR11_3613(PF13704)
439497.RR11_2668(PF08669)
439497.RR11_2984(PF13704)
439497.RR11_1564(PF07366)
439497.RR11_2698(PF02485)
439497.RR11_1969(PF09585)
439497.RR11_2047(PF01755)
439497.RR11_413(PF09585)
439497.RR11_1206(PF13704)
439497.RR11_2494(PF01755)
439497.RR11_2491(PF02475)
439497.RR11_3165(PF13704)
439497.RR11_3169(PF13704)
439497.RR11_1928(PF07366)
439497.RR11_2315PF11781
439497.RR11_215(PF01755)
439497.RR11_1124(PF13704)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================