Effective results for Acholeplasma laidlawii PG-8A (eggnog40)

Summary

Number of putative secreted proteins: 26
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 26 proteins (0 high, 26 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
441768.ACL_0971				(PF01813)	(mitochondrial)
441768.ACL_0977				(PF00137)	ER
441768.ACL_0117				(PF04231)	ER
441768.ACL_1174				(PF01992)	mitochondrial; (mitochondrial)
441768.ACL_1172				(PF00137)	ER
441768.ACL_1169				(PF16886)	(mitochondrial)
441768.ACL_0142				(PF11074)	(mitochondrial)
441768.ACL_0987				(PF00137)	(ER)
441768.ACL_0978				(PF01496)
441768.ACL_0973				(PF16886)
441768.ACL_0974				(PF01990)
441768.ACL_0975				(PF01992)
441768.ACL_0555				(PF01795)
441768.ACL_0154				(PF04231)
441768.ACL_0155				(PF04231)
441768.ACL_0439				(PF16804)
441768.ACL_1061				(PF17167)
441768.ACL_0160				(PF04231)
441768.ACL_1398				(PF14249)
441768.ACL_0729				(PF17167)
441768.ACL_0039				(PF17167)
441768.ACL_0569				(PF02475)
441768.ACL_0915				(PF01795)
441768.ACL_1173				(PF01496)
441768.ACL_1171				(PF01990)
441768.ACL_1167				(PF01813)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================