Effective results for Marinobacter algicola DG893 (eggnog40)

Summary

Number of putative secreted proteins: 33
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 15 eukaryotic-like domains, contained in 33 proteins (1 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
443152.MDG893_20044				(PF09317)	ER
443152.MDG893_19084				(PF04862)	ER
443152.MDG893_00180				(PF13653)	ER; mitochondrial
443152.MDG893_04739				(PF06241)	mitochondrial
443152.MDG893_12535				(PF00209)	ER
443152.MDG893_08375				(PF13276)	mitochondrial; (mitochondrial)
443152.MDG893_17192				(PF00209)	(ER)
443152.MDG893_19709				(PF13276)	mitochondrial
443152.MDG893_07225				(PF13276)	mitochondrial
443152.MDG893_18739				(PF09317)	ER
443152.MDG893_09005				(PF13276)	mitochondrial
443152.MDG893_19824				(PF13276)	(mitochondrial)
443152.MDG893_20049				(PF09317)	not used
443152.MDG893_03520				(PF10013)	not used
443152.MDG893_11406				(PF05686)
443152.MDG893_04192				(PF00209)
443152.MDG893_07885				(PF00209)
443152.MDG893_15402				PF02041
443152.MDG893_11561				(PF03015)
443152.MDG893_04217				(PF13276)
443152.MDG893_18794				(PF00165)
443152.MDG893_04232				(PF13276)
443152.MDG893_12530				(PF00209)
443152.MDG893_19859				(PF13276)
443152.MDG893_07260				(PF13276)
443152.MDG893_06404				(PF11815)
443152.MDG893_14358				(PF13276)
443152.MDG893_15487				(PF16983)
443152.MDG893_10451				(PF12038)
443152.MDG893_06985				(PF11815)
443152.MDG893_20504				(PF13875)
443152.MDG893_09025				(PF13276)
443152.MDG893_14158				(PF13276)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.0 (16/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================