Effective results for Marinitoga piezophila KA3 (eggnog40)

Summary

Number of putative secreted proteins: 45
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 45 proteins (8 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
443254.Marpi_0212(PF13353)(mitochondrial)
443254.Marpi_1830(PF03266)(mitochondrial)
443254.Marpi_1006PF08309ER
443254.Marpi_0744(PF16561)ER
443254.Marpi_1978PF08309ER
443254.Marpi_0295(PF13455)ER
443254.Marpi_2037PF08309ER
443254.Marpi_1336PF08309ER
443254.Marpi_1983PF08309ER
443254.Marpi_0633PF08309ER
443254.Marpi_0639PF08309ER
443254.Marpi_1340(PF16561)ER
443254.Marpi_1165(PF09820) (PF08011)
443254.Marpi_1161(PF09820) (PF08011)
443254.Marpi_0166(PF09820) (PF08011)
443254.Marpi_0168(PF09820) (PF08011)
443254.Marpi_2043(PF09820) (PF08011)
443254.Marpi_0415(PF09820) (PF08011)
443254.Marpi_1982(PF09820) (PF08011)
443254.Marpi_1040(PF09820) (PF08011)
443254.Marpi_2082(PF01637)
443254.Marpi_1039(PF01637)
443254.Marpi_0924(PF08011)
443254.Marpi_0216(PF01637)
443254.Marpi_1498(PF13353)
443254.Marpi_1319(PF13353)
443254.Marpi_1177(PF13353)
443254.Marpi_0692(PF13353)
443254.Marpi_1502(PF13353)
443254.Marpi_1281(PF01637)
443254.Marpi_0401PF11443
443254.Marpi_0712(PF12646)
443254.Marpi_0422(PF09820)
443254.Marpi_1723(PF13353)
443254.Marpi_1002(PF13353)
443254.Marpi_0448(PF09419)
443254.Marpi_1660(PF13353)
443254.Marpi_0919(PF13353)
443254.Marpi_0918(PF13353)
443254.Marpi_0911(PF13353)
443254.Marpi_0914(PF08011)
443254.Marpi_1986(PF09820)
443254.Marpi_1512(PF13353)
443254.Marpi_1510(PF13353)
443254.Marpi_1511(PF13353)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================