Effective results for Clostridium sp. 7_2_43FAA (eggnog40)

Summary

Number of putative secreted proteins: 97
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 97 proteins (9 high, 88 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
457396.CSBG_02973(PF16403)mitochondrial
457396.CSBG_02972(PF16403)ER; (ER)
457396.CSBG_02974(PF16403)ER
457396.CSBG_00832PF11070ER
457396.CSBG_03356(PF00367)ER
457396.CSBG_03354PF14566ER
457396.CSBG_02178(PF12051)mitochondrial
457396.CSBG_02422(PF00367)ER
457396.CSBG_01238(PF00453)(mitochondrial)
457396.CSBG_01237(PF01632)(mitochondrial)
457396.CSBG_00165(PF02535)ER
457396.CSBG_00160(PF00367)ER
457396.CSBG_00169(PF16403)ER
457396.CSBG_02137(PF01632)(mitochondrial)
457396.CSBG_02136(PF00453)(mitochondrial)
457396.CSBG_03405(PF00367)ER
457396.CSBG_01369(PF16403)ER
457396.CSBG_02114PF11070ER
457396.CSBG_02641(PF02535)ER
457396.CSBG_02498(PF02535)ER
457396.CSBG_00419(PF16403)ER
457396.CSBG_00670(PF00367)(ER)
457396.CSBG_02830(PF00367)(mitochondrial)
457396.CSBG_00847(PF01418)mitochondrial
457396.CSBG_00074(PF00163)mitochondrial
457396.CSBG_00836(PF09359)(mitochondrial)
457396.CSBG_01689(PF12724)(mitochondrial)
457396.CSBG_00558(PF02535)(ER)
457396.CSBG_02828PF14566ER
457396.CSBG_01402(PF01418)
457396.CSBG_00627(PF02915)
457396.CSBG_00908(PF01418)
457396.CSBG_02182(PF09359)
457396.CSBG_00562(PF00367)
457396.CSBG_00848(PF00367)
457396.CSBG_00803(PF00367)
457396.CSBG_00802(PF01418)
457396.CSBG_03358(PF01418)
457396.CSBG_03355(PF04794)
457396.CSBG_02777(PF12724)
457396.CSBG_02179(PF12051)
457396.CSBG_01464(PF00367)
457396.CSBG_02080(PF01418)
457396.CSBG_01511PF11443
457396.CSBG_02423(PF01418)
457396.CSBG_02420(PF04794)
457396.CSBG_02948(PF01418)
457396.CSBG_02899(PF01633)
457396.CSBG_03200(PF02915)
457396.CSBG_03373(PF12638)
457396.CSBG_02236(PF00367)
457396.CSBG_02237(PF01418)
457396.CSBG_01151(PF12724)
457396.CSBG_02936(PF00367)
457396.CSBG_02931(PF07892)
457396.CSBG_01946PF12646
457396.CSBG_02141(PF00367)
457396.CSBG_01234PF04275
457396.CSBG_02459(PF01386)
457396.CSBG_01490(PF02915)
457396.CSBG_02133(PF12513)
457396.CSBG_01555(PF01418)
457396.CSBG_01177(PF07720)
457396.CSBG_01485(PF01418)
457396.CSBG_00751(PF01418)
457396.CSBG_01962(PF02915)
457396.CSBG_00984(PF02915)
457396.CSBG_00560(PF01418)
457396.CSBG_02678(PF01991)
457396.CSBG_02901(PF01633)
457396.CSBG_02275(PF00367)
457396.CSBG_02062(PF12724)
457396.CSBG_02486(PF07892)
457396.CSBG_00731(PF00367)
457396.CSBG_03194(PF14249)
457396.CSBG_00432(PF16889)
457396.CSBG_00345(PF08950)
457396.CSBG_00728(PF01418)
457396.CSBG_00727(PF01418)
457396.CSBG_00231(PF01418)
457396.CSBG_00232(PF04794)
457396.CSBG_00233(PF00367)
457396.CSBG_02254(PF01386)
457396.CSBG_02255(PF00163)
457396.CSBG_01628(PF01418)
457396.CSBG_01627(PF00367)
457396.CSBG_00393(PF16889)
457396.CSBG_01382(PF12724)
457396.CSBG_03390(PF02915)
457396.CSBG_01737PF04184
457396.CSBG_00608(PF12724)
457396.CSBG_00282(PF01418)
457396.CSBG_03004PF12646
457396.CSBG_01253(PF01386)
457396.CSBG_02610(PF00367)
457396.CSBG_00279(PF00367)
457396.CSBG_02758(PF01418)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================