Effective results for Clostridium sp. 7_2_43FAA (eggnog40)

Summary

Number of putative secreted proteins: 97
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 28 eukaryotic-like domains, contained in 97 proteins (9 high, 88 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
457396.CSBG_02973				(PF16403)	mitochondrial
457396.CSBG_02972				(PF16403)	ER; (ER)
457396.CSBG_02974				(PF16403)	ER
457396.CSBG_00832				PF11070	ER
457396.CSBG_03356				(PF00367)	ER
457396.CSBG_03354				PF14566	ER
457396.CSBG_02178				(PF12051)	mitochondrial
457396.CSBG_02422				(PF00367)	ER
457396.CSBG_01238				(PF00453)	(mitochondrial)
457396.CSBG_01237				(PF01632)	(mitochondrial)
457396.CSBG_00165				(PF02535)	ER
457396.CSBG_00160				(PF00367)	ER
457396.CSBG_00169				(PF16403)	ER
457396.CSBG_02137				(PF01632)	(mitochondrial)
457396.CSBG_02136				(PF00453)	(mitochondrial)
457396.CSBG_03405				(PF00367)	ER
457396.CSBG_01369				(PF16403)	ER
457396.CSBG_02114				PF11070	ER
457396.CSBG_02641				(PF02535)	ER
457396.CSBG_02498				(PF02535)	ER
457396.CSBG_00419				(PF16403)	ER
457396.CSBG_00670				(PF00367)	(ER)
457396.CSBG_02830				(PF00367)	(mitochondrial)
457396.CSBG_00847				(PF01418)	mitochondrial
457396.CSBG_00074				(PF00163)	mitochondrial
457396.CSBG_00836				(PF09359)	(mitochondrial)
457396.CSBG_01689				(PF12724)	(mitochondrial)
457396.CSBG_00558				(PF02535)	(ER)
457396.CSBG_02828				PF14566	ER
457396.CSBG_01402				(PF01418)
457396.CSBG_00627				(PF02915)
457396.CSBG_00908				(PF01418)
457396.CSBG_02182				(PF09359)
457396.CSBG_00562				(PF00367)
457396.CSBG_00848				(PF00367)
457396.CSBG_00803				(PF00367)
457396.CSBG_00802				(PF01418)
457396.CSBG_03358				(PF01418)
457396.CSBG_03355				(PF04794)
457396.CSBG_02777				(PF12724)
457396.CSBG_02179				(PF12051)
457396.CSBG_01464				(PF00367)
457396.CSBG_02080				(PF01418)
457396.CSBG_01511				PF11443
457396.CSBG_02423				(PF01418)
457396.CSBG_02420				(PF04794)
457396.CSBG_02948				(PF01418)
457396.CSBG_02899				(PF01633)
457396.CSBG_03200				(PF02915)
457396.CSBG_03373				(PF12638)
457396.CSBG_02236				(PF00367)
457396.CSBG_02237				(PF01418)
457396.CSBG_01151				(PF12724)
457396.CSBG_02936				(PF00367)
457396.CSBG_02931				(PF07892)
457396.CSBG_01946				PF12646
457396.CSBG_02141				(PF00367)
457396.CSBG_01234				PF04275
457396.CSBG_02459				(PF01386)
457396.CSBG_01490				(PF02915)
457396.CSBG_02133				(PF12513)
457396.CSBG_01555				(PF01418)
457396.CSBG_01177				(PF07720)
457396.CSBG_01485				(PF01418)
457396.CSBG_00751				(PF01418)
457396.CSBG_01962				(PF02915)
457396.CSBG_00984				(PF02915)
457396.CSBG_00560				(PF01418)
457396.CSBG_02678				(PF01991)
457396.CSBG_02901				(PF01633)
457396.CSBG_02275				(PF00367)
457396.CSBG_02062				(PF12724)
457396.CSBG_02486				(PF07892)
457396.CSBG_00731				(PF00367)
457396.CSBG_03194				(PF14249)
457396.CSBG_00432				(PF16889)
457396.CSBG_00345				(PF08950)
457396.CSBG_00728				(PF01418)
457396.CSBG_00727				(PF01418)
457396.CSBG_00231				(PF01418)
457396.CSBG_00232				(PF04794)
457396.CSBG_00233				(PF00367)
457396.CSBG_02254				(PF01386)
457396.CSBG_02255				(PF00163)
457396.CSBG_01628				(PF01418)
457396.CSBG_01627				(PF00367)
457396.CSBG_00393				(PF16889)
457396.CSBG_01382				(PF12724)
457396.CSBG_03390				(PF02915)
457396.CSBG_01737				PF04184
457396.CSBG_00608				(PF12724)
457396.CSBG_00282				(PF01418)
457396.CSBG_03004				PF12646
457396.CSBG_01253				(PF01386)
457396.CSBG_02610				(PF00367)
457396.CSBG_00279				(PF00367)
457396.CSBG_02758				(PF01418)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================