Effective results for Micrococcus luteus NCTC 2665 (eggnog40)

Summary

Number of putative secreted proteins: 40
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 7 eukaryotic-like domains, contained in 40 proteins (4 high, 36 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
465515.MlutN2_010100002032				(PF00872)	mitochondrial
465515.MlutN2_010100010533				PF00828	(mitochondrial); not used
465515.MlutN2_010100011024				(PF00872)
465515.MlutN2_010100006130				(PF00872)
465515.MlutN2_010100007422				(PF01610)	not used
465515.MlutN2_010100010006				PF08213	not used
465515.MlutN2_010100000127				(PF00872)
465515.MlutN2_010100011019				(PF00872)
465515.MlutN2_010100005528				(PF00872)
465515.MlutN2_010100000132				(PF00872)
465515.MlutN2_010100002701				(PF14622)	not used
465515.MlutN2_010100002706				(PF14622)
465515.MlutN2_010100000102				(PF00872)	not used
465515.MlutN2_010100005196				(PF01610)	not used
465515.MlutN2_010100006983				(PF01610)
465515.MlutN2_010100007297				(PF01610)
465515.MlutN2_010100009771				(PF00872)
465515.MlutN2_010100008742				(PF00872)
465515.MlutN2_010100008692				(PF00872)
465515.MlutN2_010100001187				(PF01610)	not used
465515.MlutN2_010100001562				(PF01121)
465515.MlutN2_010100009159				(PF01610)
465515.MlutN2_010100010984				(PF00872)
465515.MlutN2_010100001087				(PF00872)
465515.MlutN2_010100001557				(PF01121)
465515.MlutN2_010100007008				(PF00872)
465515.MlutN2_010100002039				(PF00872)
465515.MlutN2_010100001942				(PF00872)
465515.MlutN2_010100001947				(PF00872)
465515.MlutN2_010100008772				(PF01610)
465515.MlutN2_010100010528				PF00828
465515.MlutN2_010100003955				(PF00872)
465515.MlutN2_010100004097				PF00910
465515.MlutN2_010100001937				(PF00872)
465515.MlutN2_010100009946				(PF01610)
465515.MlutN2_010100004886				(PF01610)
465515.MlutN2_010100010979				(PF01610)
465515.MlutN2_010100010974				(PF00872)
465515.MlutN2_010100001042				(PF00872)
465515.MlutN2_010100002586				(PF01610)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================